RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 SYS1-DBNDD2H3BUS1 97 aa12.95□□□□□ -0.34
CKAP4-201ENST00000378026 TNFSF15O95150 251 aa12.95□□□□□ -0.34
CKAP4-201ENST00000378026 TCTAP57738 103 aa12.95□□□□□ -0.34
CKAP4-201ENST00000378026 FOXE3Q13461 319 aa12.95□□□□□ -0.34
CKAP4-201ENST00000378026 OR10W1Q8NGF6 305 aa12.95□□□□□ -0.34
CKAP4-201ENST00000378026 GRAMD2BQ96HH9 432 aa12.95□□□□□ -0.34
CKAP4-201ENST00000378026 ZPBPQ9BS86 351 aa12.95□□□□□ -0.34
CKAP4-201ENST00000378026 CADP27708 2225 aa12.95□□□□□ -0.34
CKAP4-201ENST00000378026 CSN3P07498 182 aa12.94□□□□□ -0.34
CKAP4-201ENST00000378026 HEATR1Q9H583 2144 aaKnown RBP12.94□□□□□ -0.34
CKAP4-201ENST00000378026 IGHV1-24A0A0C4DH33 117 aa12.94□□□□□ -0.34
CKAP4-201ENST00000378026 SAP30O75446 220 aa12.94□□□□□ -0.34
CKAP4-201ENST00000378026 TMEM14BQ9NUH8 114 aa12.94□□□□□ -0.34
CKAP4-201ENST00000378026 K7ESF4 209 aa12.94□□□□□ -0.34
CKAP4-201ENST00000378026 TOX4O94842 621 aa12.94□□□□□ -0.34
CKAP4-201ENST00000378026 SAA2P0DJI9 122 aaPredicted RBP12.94□□□□□ -0.34
CKAP4-201ENST00000378026 SSBP2P81877 361 aaPredicted RBP12.94□□□□□ -0.34
CKAP4-201ENST00000378026 KLF5Q13887 457 aaPredicted RBP12.94□□□□□ -0.34
CKAP4-201ENST00000378026 DEFB125Q8N687 156 aa12.94□□□□□ -0.34
CKAP4-201ENST00000378026 BLNKQ8WV28 456 aa12.94□□□□□ -0.34
CKAP4-201ENST00000378026 UQCRFS1P47985 274 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 FAM120AOSQ5T036 256 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 FAM90A1Q86YD7 464 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 MBD6Q96DN6 1003 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 PGLYRP4Q96LB8 373 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 NAA38Q9BRA0 125 aaKnown RBP12.93□□□□□ -0.34
CKAP4-201ENST00000378026 SLC25A2Q9BXI2 301 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 MEGF9Q9H1U4 602 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 ST20Q9HBF5 79 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 ZNRD1Q9P1U0 126 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 JPT1Q9UK76 154 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 DYSFO75923 2080 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 PCSK5Q92824 1860 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 APOA2P02652 100 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 IGHV1-2P23083 117 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 LOXL3P58215 753 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 BPIFB3P59826 476 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 PRR7Q8TB68 274 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 WIPF2Q8TF74 440 aaPredicted RBP12.93□□□□□ -0.34
CKAP4-201ENST00000378026 CSTL1Q9H114 145 aa12.93□□□□□ -0.34
CKAP4-201ENST00000378026 CT45A1Q5HYN5 189 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 FAM201AQ5SY85 155 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 OR2Z1Q8NG97 314 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 CT45A3Q8NHU0 189 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 ZNF576Q9H609 170 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 FOXA2Q9Y261 457 aaPredicted RBP12.92□□□□□ -0.34
CKAP4-201ENST00000378026 MAP1BP46821 2468 aaKnown RBP12.92□□□□□ -0.34
CKAP4-201ENST00000378026 IGKV1D-17A0A075B6S4 117 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 H3BTX0 84 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 PEX7O00628 323 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 PRB4P10163 310 aaPredicted RBP12.92□□□□□ -0.34
CKAP4-201ENST00000378026 MEOX1P50221 254 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 SARAFQ96BY9 339 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 DDB2Q92466 427 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 FAM167A-AS1Q96KT0 104 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 PAXXQ9BUH6 204 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 ABCA1O95477 2261 aa12.92□□□□□ -0.34
CKAP4-201ENST00000378026 PPIAL4DF5H284 164 aa12.91□□□□□ -0.34
CKAP4-201ENST00000378026 IGKV1-16P04430 117 aa12.91□□□□□ -0.34
CKAP4-201ENST00000378026 C6orf15Q6UXA7 325 aaPredicted RBP12.91□□□□□ -0.34
CKAP4-201ENST00000378026 C12orf54Q6X4T0 127 aa12.91□□□□□ -0.34
CKAP4-201ENST00000378026 TMEM191AQ9H0A3 160 aa12.91□□□□□ -0.34
CKAP4-201ENST00000378026 COX7A2P2O60397 106 aa12.91□□□□□ -0.34
CKAP4-201ENST00000378026 RND1Q92730 232 aa12.91□□□□□ -0.34
CKAP4-201ENST00000378026 CALYQ9NYX4 217 aa12.91□□□□□ -0.34
CKAP4-201ENST00000378026 NTN3O00634 580 aaPredicted RBP12.9□□□□□ -0.34
CKAP4-201ENST00000378026 HIST1H1EP10412 219 aaKnown RBP12.9□□□□□ -0.34
CKAP4-201ENST00000378026 ZNF329Q86UD4 541 aa12.9□□□□□ -0.34
CKAP4-201ENST00000378026 WFDC8Q8IUA0 241 aa12.9□□□□□ -0.34
CKAP4-201ENST00000378026 TMEM105Q8N8V8 129 aa12.9□□□□□ -0.34
CKAP4-201ENST00000378026 CNEP1R1Q8N9A8 125 aa12.9□□□□□ -0.34
CKAP4-201ENST00000378026 FNDC4Q9H6D8 234 aaPredicted RBP12.9□□□□□ -0.34
CKAP4-201ENST00000378026 SRRM4A7MD48 611 aaKnown RBP12.9□□□□□ -0.34
CKAP4-201ENST00000378026 K7ERU9 68 aa12.9□□□□□ -0.34
CKAP4-201ENST00000378026 OR2J3O76001 311 aa12.9□□□□□ -0.34
CKAP4-201ENST00000378026 RASL11AQ6T310 242 aa12.9□□□□□ -0.34
CKAP4-201ENST00000378026 LINC00322Q6ZN03 302 aaPredicted RBP12.9□□□□□ -0.34
CKAP4-201ENST00000378026 ABI3Q9P2A4 366 aa12.9□□□□□ -0.34
CKAP4-201ENST00000378026 HBBP68871 147 aa12.9□□□□□ -0.35
CKAP4-201ENST00000378026 SLC25A5P05141 298 aaKnown RBP12.89□□□□□ -0.35
CKAP4-201ENST00000378026 SPRNQ5BIV9 151 aa12.89□□□□□ -0.35
CKAP4-201ENST00000378026 NAV3Q8IVL0 2385 aa12.89□□□□□ -0.35
CKAP4-201ENST00000378026 TEX50A0A1B0GTY4 177 aa12.89□□□□□ -0.35
CKAP4-201ENST00000378026 DUX4L9Q6RFH8 374 aaPredicted RBP12.89□□□□□ -0.35
CKAP4-201ENST00000378026 C7orf71A4D174 169 aa12.88□□□□□ -0.35
CKAP4-201ENST00000378026 KIR2DS2P43631 304 aa12.88□□□□□ -0.35
CKAP4-201ENST00000378026 CHRDL1Q9BU40 450 aa12.88□□□□□ -0.35
CKAP4-201ENST00000378026 MAP1LC3CQ9BXW4 147 aa12.88□□□□□ -0.35
CKAP4-201ENST00000378026 SCRT2Q9NQ03 307 aa12.88□□□□□ -0.35
CKAP4-201ENST00000378026 GAGE10A6NGK3 116 aa12.88□□□□□ -0.35
CKAP4-201ENST00000378026 RTL8BQ17RB0 113 aa12.88□□□□□ -0.35
CKAP4-201ENST00000378026 FAM231DQ6ZW35 169 aa12.88□□□□□ -0.35
CKAP4-201ENST00000378026 MGST3O14880 152 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 PLXNB1O43157 2135 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 GPR183P32249 361 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 PRCDQ00LT1 54 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 C10orf113Q5VZT2 155 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 DEFB108BQ8NET1 73 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 SPRR3Q9UBC9 169 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 PRNDQ9UKY0 176 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms