RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 A8MWP6 167 aa16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 TIMM23BQ5SRD1 257 aa16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 ELOVL5Q9NYP7 299 aa16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 HBDP02042 147 aa16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 RNF144BQ7Z419 303 aa16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 DNASE2BQ8WZ79 361 aa16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 NYNRINQ9P2P1 1898 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 STPG1Q5TH74 334 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 ZNF497Q6ZNH5 498 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 SHISA5Q8N114 240 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 IGHV3-49A0A0A0MS15 119 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 C15orf61A6NNL5 157 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 DYNLRB2Q8TF09 96 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 ZNF703Q9H7S9 590 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 PILRBQ9UKJ0 227 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 NDUFS8O00217 210 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 UMODP07911 640 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 GLRXP35754 106 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 LEPP41159 167 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 TREML4Q6UXN2 200 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 MRPL20Q9BYC9 149 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 EP400Q96L91 3159 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 C3orf79P0CE67 100 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 TSKUQ8WUA8 353 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 CHODLQ9H9P2 273 aa16.3■□□□□ 0.2
CCDC88B-202ENST00000356786 A0A0G2JMM0 328 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 A0A1W2PPB8 328 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 KIR3DP1A8MWS1 328 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 TDGF1P3P51864 188 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 SPTAN1Q13813 2472 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 OR9G9P0C7N8 305 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 SAA1P0DJI8 122 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 UBE2V1Q13404 147 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 MPV17L2Q567V2 206 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 GGTLC1Q9BX51 225 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 RNASE1P07998 156 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 GBF1Q92538 1859 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 TRAV8-2A0A0B4J237 113 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 UPK2O00526 184 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 COQ2Q96H96 371 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 SIGLEC12Q96PQ1 595 aa16.29■□□□□ 0.2
CCDC88B-202ENST00000356786 DNAL4O96015 105 aa16.28■□□□□ 0.2
CCDC88B-202ENST00000356786 LYL1P12980 280 aa16.28■□□□□ 0.2
CCDC88B-202ENST00000356786 FAM90A2PQ658T7 463 aa16.28■□□□□ 0.2
CCDC88B-202ENST00000356786 FAM159AQ6UWV7 190 aa16.28■□□□□ 0.2
CCDC88B-202ENST00000356786 CHCHD1Q96BP2 118 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-202ENST00000356786 IGHV3OR16-8A0A075B7F1 116 aa16.28■□□□□ 0.2
CCDC88B-202ENST00000356786 IGHV2-70P01814 119 aa16.28■□□□□ 0.2
CCDC88B-202ENST00000356786 BMPERQ8N8U9 685 aa16.28■□□□□ 0.2
CCDC88B-202ENST00000356786 ZNF585BQ52M93 769 aa16.28■□□□□ 0.2
CCDC88B-202ENST00000356786 AGMATQ9BSE5 352 aa16.28■□□□□ 0.2
CCDC88B-202ENST00000356786 FAM181BA6NEQ2 426 aa16.27■□□□□ 0.2
CCDC88B-202ENST00000356786 HSD52Q0P140 79 aa16.27■□□□□ 0.2
CCDC88B-202ENST00000356786 DDB2Q92466 427 aa16.27■□□□□ 0.2
CCDC88B-202ENST00000356786 KLHDC3Q9BQ90 382 aa16.27■□□□□ 0.2
CCDC88B-202ENST00000356786 VKORC1Q9BQB6 163 aa16.27■□□□□ 0.2
CCDC88B-202ENST00000356786 SAA2-SAA4A0A096LPE2 208 aa16.27■□□□□ 0.2
CCDC88B-202ENST00000356786 SAA2P0DJI9 122 aaPredicted RBP16.27■□□□□ 0.2
CCDC88B-202ENST00000356786 MRAP2Q96G30 205 aa16.27■□□□□ 0.2
CCDC88B-202ENST00000356786 ZNF479Q96JC4 524 aa16.27■□□□□ 0.2
CCDC88B-202ENST00000356786 ZSWIM8A7E2V4 1837 aa16.27■□□□□ 0.2
CCDC88B-202ENST00000356786 YPEL1O60688 119 aa16.27■□□□□ 0.19
CCDC88B-202ENST00000356786 CELA3BP08861 270 aa16.27■□□□□ 0.19
CCDC88B-202ENST00000356786 DUTP33316 252 aaKnown RBP16.27■□□□□ 0.19
CCDC88B-202ENST00000356786 CD69Q07108 199 aa16.27■□□□□ 0.19
CCDC88B-202ENST00000356786 YPEL2Q96QA6 119 aa16.27■□□□□ 0.19
CCDC88B-202ENST00000356786 MS4A6AQ9H2W1 248 aa16.27■□□□□ 0.19
CCDC88B-202ENST00000356786 OTORQ9NRC9 128 aa16.27■□□□□ 0.19
CCDC88B-202ENST00000356786 LRRK1Q38SD2 2015 aa16.27■□□□□ 0.19
CCDC88B-202ENST00000356786 IFI27L1Q96BM0 104 aa16.27■□□□□ 0.19
CCDC88B-202ENST00000356786 MTCL1Q9Y4B5 1905 aaKnown RBP16.27■□□□□ 0.19
CCDC88B-202ENST00000356786 NCOR1O75376 2440 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 C9JCJ5 164 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 TM4SF5O14894 197 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 MORN2Q502X0 79 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 TPTE2P1Q5T6R2 138 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 ATP1A1-AS1Q5TC04 95 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 SAMD5Q5TGI4 173 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 NUDT10Q8NFP7 164 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 VCX2Q9H322 139 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 GP6Q9HCN6 339 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 IGKV1-27A0A075B6S5 117 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 IGKV1-5P01602 117 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 IGHV3-23P01764 117 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 CRYGSP22914 178 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 NBASA2RRP1 2371 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 TFF1P04155 84 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 QRFPP83859 136 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 PRR31Q5SQ13 230 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 COPS9Q8WXC6 57 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 DOCK6Q96HP0 2047 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 THSD7BQ9C0I4 1608 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 IGHV3-66A0A0C4DH42 116 aa16.26■□□□□ 0.19
CCDC88B-202ENST00000356786 PPP1R17O96001 155 aa16.25■□□□□ 0.19
CCDC88B-202ENST00000356786 SPSB3Q6PJ21 355 aa16.25■□□□□ 0.19
CCDC88B-202ENST00000356786 TMEM14EPQ6UXP3 125 aa16.25■□□□□ 0.19
CCDC88B-202ENST00000356786 IMMP1LQ96LU5 166 aa16.25■□□□□ 0.19
CCDC88B-202ENST00000356786 IQCF6A8MYZ5 107 aa16.25■□□□□ 0.19
CCDC88B-202ENST00000356786 SPATA31B1PQ5VZV4 182 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms