RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 TIMP3P35625 211 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 EFNA4P52798 201 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 LAGE3Q14657 143 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 RASL10AQ92737 203 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 CST9LQ9H4G1 147 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 NRN1Q9NPD7 142 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 ADAMTSL1Q8N6G6 1762 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 TRBV7-1A0A0A6YYK4 115 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 IGKV1D-43A0A0B4J1Z2 117 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 IGHV1-18A0A0C4DH31 117 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.38□□□□□ -1.55
UPF2-201ENST00000356352 CCL3L1P16619 93 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 GNG5P63218 68 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 DERL1Q9BUN8 251 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 ATAD5Q96QE3 1844 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 TRAV2A0A0B4J234 112 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 TOMM40O96008 361 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 CELA3BP08861 270 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 LGALS1P09382 135 aaKnown RBP5.37□□□□□ -1.55
UPF2-201ENST00000356352 NSUN5P1Q3KNT7 163 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 COL5A3P25940 1745 aaPredicted RBP5.37□□□□□ -1.55
UPF2-201ENST00000356352 A8MXK9 166 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 ADMP35318 185 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 LINC00158P58513 81 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 RPL36AP83881 106 aaKnown RBP5.37□□□□□ -1.55
UPF2-201ENST00000356352 HSD52Q0P140 79 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 FAM89BQ8N5H3 189 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 RPL36ALQ969Q0 106 aaKnown RBP5.37□□□□□ -1.55
UPF2-201ENST00000356352 MBNL3Q9NUK0 354 aaKnown RBP5.37□□□□□ -1.55
UPF2-201ENST00000356352 TNS1Q9HBL0 1735 aaKnown RBP5.37□□□□□ -1.55
UPF2-201ENST00000356352 ARFGEF1Q9Y6D6 1849 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 KIAA1217Q5T5P2 1943 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 A0A087WX48 190 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 MUC21A0A0G2JKD1 596 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 MUC21A0A140T8X8 626 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 A8MWV9 139 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 M0R1W7 72 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 TIMM23O14925 209 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 SAP30O75446 220 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 DUTP33316 252 aaKnown RBP5.37□□□□□ -1.55
UPF2-201ENST00000356352 SLC25A48Q6ZT89 311 aaKnown RBP5.37□□□□□ -1.55
UPF2-201ENST00000356352 C9orf139Q6ZV77 190 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 RNF166Q96A37 237 aaPredicted RBP5.37□□□□□ -1.55
UPF2-201ENST00000356352 RCHY1Q96PM5 261 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 JPT2Q9H910 190 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 LAMTOR2Q9Y2Q5 125 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 TUBGCP6Q96RT7 1819 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 IGKV3D-20A0A0C4DH25 116 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 FAM223BA6NKX1 122 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 H3BUT2 72 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 SERF1AO75920 110 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 FBLN7Q53RD9 439 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 FAM223AQ8IWN6 122 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 ORAOV1Q8WV07 137 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 GLMPQ8WWB7 406 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 SPAG8Q99932 426 aaPredicted RBP5.37□□□□□ -1.55
UPF2-201ENST00000356352 PRR32B1ATL7 298 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 HAPLN4Q86UW8 402 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 ANKRD31Q8N7Z5 1873 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 USMG5Q96IX5 58 aa5.37□□□□□ -1.55
UPF2-201ENST00000356352 RNASE7Q9H1E1 156 aaKnown RBP5.37□□□□□ -1.55
UPF2-201ENST00000356352 TRAV40A0A0B4J280 105 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 RNF222A6NCQ9 220 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 IGHV1-46P01743 117 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 GATA2P23769 480 aaPredicted RBP5.36□□□□□ -1.55
UPF2-201ENST00000356352 Q5BKY6 102 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 TMEM242Q9NWH2 141 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 NHP2Q9NX24 153 aaKnown RBP5.36□□□□□ -1.55
UPF2-201ENST00000356352 ERG28Q9UKR5 140 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 IGHV2-26A0A0B4J1V2 119 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 TRAV12-3A0A0B4J271 114 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 B4DSR2 109 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 SNAI2O43623 268 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 IFITM2Q01629 132 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 EFNB3Q15768 340 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 ZXDCQ2QGD7 858 aaPredicted RBP5.36□□□□□ -1.55
UPF2-201ENST00000356352 VMO1Q7Z5L0 202 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 ST6GALNAC6Q969X2 333 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 SLC25A39Q9BZJ4 359 aaPredicted RBP5.36□□□□□ -1.55
UPF2-201ENST00000356352 URB1O60287 2271 aaKnown RBP5.36□□□□□ -1.55
UPF2-201ENST00000356352 PRRC2BQ5JSZ5 2229 aaKnown RBP5.36□□□□□ -1.55
UPF2-201ENST00000356352 PCP4P48539 62 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 TPTE2P1Q5T6R2 138 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 LINC00477Q96M19 166 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 WDR83OSQ9Y284 106 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 TEX43Q6ZNM6 134 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 NR2C2APQ86WQ0 139 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 FAM19A2Q8N3H0 131 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 TRGV9Q99603 122 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 RNF114Q9Y508 228 aa5.36□□□□□ -1.55
UPF2-201ENST00000356352 IGHV3OR16-8A0A075B7F1 116 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 F8VVB4 439 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 F8VWA3 439 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 TGFBR3LH3BV60 316 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 INSP01308 110 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 SLC25A16P16260 332 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 ZFP36L1Q07352 338 aaKnown RBP5.35□□□□□ -1.55
UPF2-201ENST00000356352 SPACA3Q8IXA5 215 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 IFI27L1Q96BM0 104 aa5.35□□□□□ -1.55
UPF2-201ENST00000356352 PLSCR4Q9NRQ2 329 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms