RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 NECAP2Q9NVZ3 263 aa8.29□□□□□ -1.08
SYNE1-203ENST00000354674 TSSC4Q9Y5U2 329 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-203ENST00000354674 TRBV20OR9-2A0A075B6H5 130 aa8.29□□□□□ -1.08
SYNE1-203ENST00000354674 TEX48A0A1B0GUV7 120 aa8.29□□□□□ -1.08
SYNE1-203ENST00000354674 SRRM5B3KS81 715 aa8.29□□□□□ -1.08
SYNE1-203ENST00000354674 CA1P00915 261 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-203ENST00000354674 ACP7Q6ZNF0 438 aa8.29□□□□□ -1.08
SYNE1-203ENST00000354674 FAM90A1Q86YD7 464 aa8.29□□□□□ -1.08
SYNE1-203ENST00000354674 NEIL1Q96FI4 390 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-203ENST00000354674 P2RX4Q99571 388 aa8.29□□□□□ -1.08
SYNE1-203ENST00000354674 GCM1Q9NP62 436 aa8.29□□□□□ -1.08
SYNE1-203ENST00000354674 IGHV3-64DA0A0J9YX35 117 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 USF1P22415 310 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-203ENST00000354674 TNFAIP6P98066 277 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-203ENST00000354674 ANXA2RQ3ZCQ2 193 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 GTF2H5Q6ZYL4 71 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 GAPTQ8N292 157 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 OR10G9Q8NGN4 311 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 OR10G7Q8NGN6 311 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 OR2T6Q8NHC8 308 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 ZNF48Q96MX3 618 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-203ENST00000354674 SERTAD4Q9NUC0 356 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 TRAV24A0A0B4J272 114 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-203ENST00000354674 M0R2Z0 102 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 ZNF324O75467 553 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-203ENST00000354674 IGLC1P0CG04 106 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 LCN2P80188 198 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 SRSF1Q07955 248 aaKnown RBP eCLIP8.28□□□□□ -1.08
SYNE1-203ENST00000354674 FAM71F2Q6NXP2 309 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 EBLN2Q6P2I7 272 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 LINC00173Q6ZV60 143 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 OCC1Q8TAD7 63 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 EPG5Q9HCE0 2579 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-203ENST00000354674 HSBP1O75506 76 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 OR7C1O76099 320 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-203ENST00000354674 SPATA31B1PQ5VZV4 182 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 GCSAMQ8N6F7 178 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 OR10G8Q8NGN5 311 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 SIGMAR1Q99720 223 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 PSENENQ9NZ42 101 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 NBASA2RRP1 2371 aa8.28□□□□□ -1.08
SYNE1-203ENST00000354674 UBR5O95071 2799 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-203ENST00000354674 TRAV9-2A0A087WT02 112 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 WNT9BO14905 357 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 S1PR2O95136 353 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 TNXAQ16473 311 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 Q6ZRM9 215 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 MOGAT3Q86VF5 341 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 PNKDQ8N490 385 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 TSKUQ8WUA8 353 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 LRRC29Q8WV35 223 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 OR8B2Q96RD0 313 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 JMJD8Q96S16 334 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 MS4A5Q9H3V2 200 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 CCL28Q9NRJ3 127 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 K7EMI3 77 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 Q6ZPA2 131 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 ZNF818PQ6ZRF7 136 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 BLNKQ8WV28 456 aa8.27□□□□□ -1.09
SYNE1-203ENST00000354674 SCO2A0A1W2PP80 73 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 RBMXL2O75526 392 aaKnown RBP8.26□□□□□ -1.09
SYNE1-203ENST00000354674 OR2H2O95918 312 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 TNFRSF1AP19438 455 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 CD1BP29016 333 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 ATP5G2Q06055 141 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 C11orf71Q6IPW1 123 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 Q6ZS49 121 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 KCNS1Q96KK3 526 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 CACNG5Q9UF02 275 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 RAI1Q7Z5J4 1906 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-203ENST00000354674 TRBV6-6A0A0A6YYG2 114 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 A0A1W2PPR1 153 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 DEGS1O15121 323 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 HOXA4Q00056 320 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-203ENST00000354674 DEFB125Q8N687 156 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 RNF7Q9UBF6 113 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 TRAV1-1A0A0B4J248 108 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 OR4C46A6NHA9 309 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 PPYP01298 95 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 HERV-K104P63124 156 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 CCL8P80075 99 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 DTX2Q86UW9 622 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 NHLRC2Q8NBF2 726 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 MBD3L1Q8WWY6 194 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 SSBP4Q9BWG4 385 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-203ENST00000354674 HINT2Q9BX68 163 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 TMEM222Q9H0R3 208 aa8.26□□□□□ -1.09
SYNE1-203ENST00000354674 RNASE7Q9H1E1 156 aaKnown RBP8.26□□□□□ -1.09
SYNE1-203ENST00000354674 GEMIN7Q9H840 131 aaKnown RBP8.26□□□□□ -1.09
SYNE1-203ENST00000354674 TANC2Q9HCD6 1990 aa8.25□□□□□ -1.09
SYNE1-203ENST00000354674 PLCE1Q9P212 2302 aa8.25□□□□□ -1.09
SYNE1-203ENST00000354674 ANKHD1Q8IWZ3 2542 aaKnown RBP8.25□□□□□ -1.09
SYNE1-203ENST00000354674 IGKV1D-13A0A0B4J2D9 117 aa8.25□□□□□ -1.09
SYNE1-203ENST00000354674 CLDN1O95832 211 aa8.25□□□□□ -1.09
SYNE1-203ENST00000354674 IGKV1-13P0DP09 117 aa8.25□□□□□ -1.09
SYNE1-203ENST00000354674 TEX36Q5VZQ5 186 aa8.25□□□□□ -1.09
SYNE1-203ENST00000354674 ZCCHC24Q8N2G6 241 aaKnown RBP8.25□□□□□ -1.09
SYNE1-203ENST00000354674 ZNF525Q8N782 197 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms