RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 PPIAL4DF5H284 164 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 G3V4G9 280 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 SNAI2O43623 268 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 CIDEAO60543 219 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 TNFSF15O95150 251 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 FOLR3P41439 243 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 ZNF138P52744 262 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 TAS2R45P59539 299 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 GABRA6Q16445 453 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 TBC1D28Q2M2D7 210 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 LINC00322Q6ZN03 302 aaPredicted RBP5.52□□□□□ -1.53
VPS39-202ENST00000348544 ATP5L2Q7Z4Y8 100 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 ZNF329Q86UD4 541 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 CT55Q8WUE5 264 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 LEAP2Q969E1 77 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 CHCHD1Q96BP2 118 aaKnown RBP5.52□□□□□ -1.53
VPS39-202ENST00000348544 TMEM191AQ9H0A3 160 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 FNDC4Q9H6D8 234 aaPredicted RBP5.52□□□□□ -1.53
VPS39-202ENST00000348544 OBP2BQ9NPH6 170 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 TNCP24821 2201 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 H0Y8G0 127 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 PEX7O00628 323 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 MAGEA5P43359 124 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 CYB561P49447 251 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 LOXL3P58215 753 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 GNG5P63218 68 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 RNFT1Q5M7Z0 435 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 LINC00696Q6ZRV3 163 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 GTSF1Q8WW33 167 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 H1FXQ92522 213 aaKnown RBP5.52□□□□□ -1.53
VPS39-202ENST00000348544 SGK494Q96LW2 274 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 NAA38Q9BRA0 125 aaKnown RBP5.52□□□□□ -1.53
VPS39-202ENST00000348544 PI4KAP42356 2102 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 TMEM265A0A087WTH1 108 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 GAGE10A6NGK3 116 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 HSBP1L1C9JCN9 74 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 HBBP68871 147 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 SSBP2P81877 361 aaPredicted RBP5.51□□□□□ -1.53
VPS39-202ENST00000348544 PAX2Q02962 417 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 RTL8BQ17RB0 113 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 SMIM21Q3B7S5 101 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 OR4S2Q8NH73 311 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 LRRC29Q8WV35 223 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 CHRDL1Q9BU40 450 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 ZNF430Q9H8G1 570 aaPredicted RBP5.51□□□□□ -1.53
VPS39-202ENST00000348544 ENY2Q9NPA8 101 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 SP9P0CG40 484 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 COX8AP10176 69 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 UQCRFS1P47985 274 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 ARF6P62330 175 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 C1orf185Q5T7R7 199 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 LINC01545Q5VT33 79 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 LYSMD4Q5XG99 296 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 PET117Q6UWS5 81 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 TEX45Q8NA69 505 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 C5orf17Q8NAS9 161 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 ZNF784Q8NCA9 323 aaPredicted RBP5.51□□□□□ -1.53
VPS39-202ENST00000348544 KLF14Q8TD94 323 aaPredicted RBP5.51□□□□□ -1.53
VPS39-202ENST00000348544 SAP25Q8TEE9 199 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 MS4A6AQ9H2W1 248 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 JPT1Q9UK76 154 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 BOKQ9UMX3 212 aaPredicted RBP5.51□□□□□ -1.53
VPS39-202ENST00000348544 OR51B2Q9Y5P1 312 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 GOSR1O95249 250 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 NCR2O95944 276 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 HIST1H1EP10412 219 aaKnown RBP5.51□□□□□ -1.53
VPS39-202ENST00000348544 FGF6P10767 208 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 HTR1DP28221 377 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 ZNF137PP52743 207 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 TMEM97Q5BJF2 176 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 FAM162BQ5T6X4 162 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 DUSP23Q9BVJ7 150 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 C19orf24Q9BVV8 132 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 MAP1LC3CQ9BXW4 147 aa5.51□□□□□ -1.53
VPS39-202ENST00000348544 PRR14LQ5THK1 2151 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 J3QW42 95 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 FSTL3O95633 263 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 LIPFP07098 398 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 SAA2P0DJI9 122 aaPredicted RBP5.5□□□□□ -1.53
VPS39-202ENST00000348544 SRFP11831 508 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 MYCNOSP40205 109 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 KIR2DS2P43631 304 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 LGALS7P47929 136 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 PATE2Q6UY27 113 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 NEGR1Q7Z3B1 354 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 BPIFA4PQ86YQ2 179 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 NANOS1Q8WY41 292 aaKnown RBP5.5□□□□□ -1.53
VPS39-202ENST00000348544 PGLYRP4Q96LB8 373 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 MRPL32Q9BYC8 188 aaKnown RBP5.5□□□□□ -1.53
VPS39-202ENST00000348544 PRSS22Q9GZN4 317 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 IGKV1D-17A0A075B6S4 117 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 C9orf118A6NHY6 69 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 H3BUT2 72 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 K7EP34 96 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 F2RL2O00254 374 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 KLK10O43240 276 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 RNASE2P10153 161 aaKnown RBP5.5□□□□□ -1.53
VPS39-202ENST00000348544 PRDX2P32119 198 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 SEC11AP67812 179 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 PRCDQ00LT1 54 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms