RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ZNF596Q8TC21 504 aa12.97□□□□□ -0.33
HMGA1-202ENST00000347617 Q8TCH9 128 aa12.97□□□□□ -0.33
HMGA1-202ENST00000347617 PRNDQ9UKY0 176 aa12.97□□□□□ -0.33
HMGA1-202ENST00000347617 IGHV3-43A0A0B4J1X8 118 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 C2orf70A6NJV1 201 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 F2RL2O00254 374 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 SPINK4O60575 86 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 HLA-DRB1P01911 266 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 IGHV3-43DP0DP04 118 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 IGLL1P15814 213 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 ZNF474Q6S9Z5 364 aaPredicted RBP12.96□□□□□ -0.34
HMGA1-202ENST00000347617 C11orf53Q8IXP5 236 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 DDB2Q92466 427 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 CHCHD1Q96BP2 118 aaKnown RBP12.96□□□□□ -0.34
HMGA1-202ENST00000347617 NCOR1P1Q9H4R4 102 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 TNFRSF19Q9NS68 423 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 GNG12Q9UBI6 72 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 ZNF257Q9Y2Q1 563 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 CELSR3Q9NYQ7 3312 aa12.96□□□□□ -0.34
HMGA1-202ENST00000347617 INTS1Q8N201 2190 aaKnown RBP12.96□□□□□ -0.34
HMGA1-202ENST00000347617 OR7C2O60412 319 aa12.95□□□□□ -0.34
HMGA1-202ENST00000347617 SLAQ13239 276 aa12.95□□□□□ -0.34
HMGA1-202ENST00000347617 EBLN2Q6P2I7 272 aa12.95□□□□□ -0.34
HMGA1-202ENST00000347617 GGTLC3B5MD39 225 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 PROP1O75360 226 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 OR5AL1P0C617 328 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 CECR9P0C854 216 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 HIST1H1EP10412 219 aaKnown RBP12.94□□□□□ -0.34
HMGA1-202ENST00000347617 RBPJQ06330 500 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 Q56UQ5 140 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 FAM53AQ6NSI3 398 aaPredicted RBP12.94□□□□□ -0.34
HMGA1-202ENST00000347617 GFRALQ6UXV0 394 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 SNRNP40Q96DI7 357 aaKnown RBP12.94□□□□□ -0.34
HMGA1-202ENST00000347617 GCM1Q9NP62 436 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 RAXQ9Y2V3 346 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 FRYQ5TBA9 3013 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 MFAP2P55001 183 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 MBNL2Q5VZF2 373 aaKnown RBP12.94□□□□□ -0.34
HMGA1-202ENST00000347617 WDR82Q6UXN9 313 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 KLF14Q8TD94 323 aaPredicted RBP12.94□□□□□ -0.34
HMGA1-202ENST00000347617 FAM122AQ96E09 287 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 ZNF503Q96F45 646 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 PMCHL2Q9BQD1 86 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 TMEM191AQ9H0A3 160 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 MS4A6AQ9H2W1 248 aa12.94□□□□□ -0.34
HMGA1-202ENST00000347617 SPTBN2O15020 2390 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 IGHV1-18A0A0C4DH31 117 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 DEFB108AA8MXU0 73 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 HSBP1L1C9JCN9 74 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 MGST3O14880 152 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 WNT9BO14905 357 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 ACTL6BO94805 426 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 AGFG2O95081 481 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 C2orf83Q53S99 150 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 LCN12Q6JVE5 192 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 SLC25A34Q6PIV7 304 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 Q6ZR03 302 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 ATOH7Q8N100 152 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 RPRMLQ8N4K4 120 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 DEFB125Q8N687 156 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 RFESDQ8TAC1 157 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 SLC25A33Q9BSK2 321 aa12.93□□□□□ -0.34
HMGA1-202ENST00000347617 ANKRD11Q6UB99 2663 aaPredicted RBP12.92□□□□□ -0.34
HMGA1-202ENST00000347617 TRAV3A0A0B4J244 114 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 SLC35B1P78383 322 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 OR4A47Q6IF82 309 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 RNASEKQ6P5S7 137 aaKnown RBP12.92□□□□□ -0.34
HMGA1-202ENST00000347617 NHLRC2Q8NBF2 726 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 ZNF714Q96N38 554 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 IFI27L2Q9H2X8 130 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 DUSP13Q9UII6 198 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 OR4C46A6NHA9 309 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 K7ERU9 68 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 CD5LO43866 347 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 LINC00205P59089 165 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 PRCDQ00LT1 54 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 ALKBH6Q3KRA9 238 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 GCSAMQ8N6F7 178 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 NUP35Q8NFH5 326 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 JKAMPQ9P055 326 aa12.92□□□□□ -0.34
HMGA1-202ENST00000347617 ASPMQ8IZT6 3477 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 PTPRQQ9UMZ3 2332 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 SVILO95425 2214 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 A0A1B0GXF2 115 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 TAX1BP3O14907 124 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 FAM87AP0C7U9 286 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 PRDX2P32119 198 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 CA7P43166 264 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 TMEM30BQ3MIR4 351 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 OCIAD2Q56VL3 154 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 CT83Q5H943 113 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 OR1L4Q8NGR5 311 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 OR1L8Q8NGR8 309 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 CACNG8Q8WXS5 425 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 CST9LQ9H4G1 147 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 IDI2-AS1Q9NZ38 188 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 OR51B2Q9Y5P1 312 aa12.91□□□□□ -0.34
HMGA1-202ENST00000347617 CFAP47Q6ZTR5 3102 aa12.9□□□□□ -0.34
HMGA1-202ENST00000347617 RNF151Q2KHN1 245 aa12.9□□□□□ -0.34
HMGA1-202ENST00000347617 MAJINQ3KP22 176 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms