RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ST6GALNAC6Q969X2 333 aa10.39□□□□□ -0.75
CLK3-201ENST00000345005 QTRT1Q9BXR0 403 aaKnown RBP10.39□□□□□ -0.75
CLK3-201ENST00000345005 MRPL20Q9BYC9 149 aaKnown RBP10.39□□□□□ -0.75
CLK3-201ENST00000345005 ARL2-SNX15V9GYD0 113 aa10.39□□□□□ -0.75
CLK3-201ENST00000345005 SETXQ7Z333 2677 aaKnown RBP10.39□□□□□ -0.75
CLK3-201ENST00000345005 ARHGAP32A7KAX9 2087 aa10.38□□□□□ -0.75
CLK3-201ENST00000345005 LOC105371242A0A075B767 164 aa10.38□□□□□ -0.75
CLK3-201ENST00000345005 CHRNA7P36544 502 aa10.38□□□□□ -0.75
CLK3-201ENST00000345005 RELBQ01201 579 aa10.38□□□□□ -0.75
CLK3-201ENST00000345005 VKORC1L1Q8N0U8 176 aa10.38□□□□□ -0.75
CLK3-201ENST00000345005 OR10G8Q8NGN5 311 aa10.38□□□□□ -0.75
CLK3-201ENST00000345005 SGMS2Q8NHU3 365 aa10.38□□□□□ -0.75
CLK3-201ENST00000345005 OSR1Q8TAX0 266 aaPredicted RBP10.38□□□□□ -0.75
CLK3-201ENST00000345005 CMTM2Q8TAZ6 248 aa10.38□□□□□ -0.75
CLK3-201ENST00000345005 CLEC7AQ9BXN2 247 aa10.38□□□□□ -0.75
CLK3-201ENST00000345005 GSX1Q9H4S2 264 aaPredicted RBP10.38□□□□□ -0.75
CLK3-201ENST00000345005 USP9XQ93008 2570 aaPredicted RBP10.38□□□□□ -0.75
CLK3-201ENST00000345005 IGHV2-26A0A0B4J1V2 119 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 A0A1W2PN81 502 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 GNB1P62873 340 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 RAB31Q13636 194 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 PDLIM3Q53GG5 364 aaPredicted RBP10.37□□□□□ -0.75
CLK3-201ENST00000345005 UHRF2Q96PU4 802 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 NABP2Q9BQ15 211 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 MIEN1Q9BRT3 115 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 ATG101Q9BSB4 218 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 ONECUT1Q9UBC0 465 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 ZFP30Q9Y2G7 519 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 C22orf46C9J442 243 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 C9JCJ5 164 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 H0YJW9 148 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 M0R1W7 72 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 HMGB3O15347 200 aaKnown RBP10.37□□□□□ -0.75
CLK3-201ENST00000345005 NDUFB4O95168 129 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 STAG3L2P0CL84 134 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 STAG3L3P0CL85 134 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 MC5RP33032 325 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 CDKN1BP46527 198 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 COL5A1-AS1Q5SY13 56 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 OR4A47Q6IF82 309 aa10.37□□□□□ -0.75
CLK3-201ENST00000345005 AKAP6Q13023 2319 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 C15orf61A6NNL5 157 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 ZNF705FA8MVS1 300 aaPredicted RBP10.36□□□□□ -0.75
CLK3-201ENST00000345005 IGLV1-47P01700 117 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 MT-ND6P03923 174 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 IGKV1-16P04430 117 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 ZNF705DP0CH99 300 aaPredicted RBP10.36□□□□□ -0.75
CLK3-201ENST00000345005 ZNF705BP0CI00 300 aaPredicted RBP10.36□□□□□ -0.75
CLK3-201ENST00000345005 NPPCP23582 126 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 Q0VG73 95 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 TMEM183BQ1AE95 376 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 HLA-DRB5Q30154 266 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 TMEM177Q53S58 311 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 PDPNQ86YL7 162 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 OR2D3Q8NGH3 330 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 GATAD1Q8WUU5 269 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 IGFBPL1Q8WX77 278 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 ZDHHC16Q969W1 377 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 FLYWCH2Q96CP2 140 aaKnown RBP10.36□□□□□ -0.75
CLK3-201ENST00000345005 IL36BQ9NZH7 164 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 PRNDQ9UKY0 176 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 FOXA2Q9Y261 457 aaPredicted RBP10.36□□□□□ -0.75
CLK3-201ENST00000345005 WASHC3Q9Y3C0 194 aa10.36□□□□□ -0.75
CLK3-201ENST00000345005 AMMECR1Q9Y4X0 333 aaPredicted RBP10.36□□□□□ -0.75
CLK3-201ENST00000345005 FLNBO75369 2602 aaKnown RBP10.36□□□□□ -0.75
CLK3-201ENST00000345005 TRAV3A0A0B4J244 114 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 FNDC10F2Z333 226 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 K7EP13 123 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 IL6RP08887 468 aaPredicted RBP10.35□□□□□ -0.75
CLK3-201ENST00000345005 REG1BP48304 166 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 BPIFB3P59826 476 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 C21orf62-AS1Q17RA5 79 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 ARSJQ5FYB0 599 aaPredicted RBP10.35□□□□□ -0.75
CLK3-201ENST00000345005 WDR73Q6P4I2 378 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 C1orf122Q6ZSJ8 110 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 OR4C13Q8NGP0 309 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 CCL19Q99731 98 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 TMEM14BQ9NUH8 114 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 BET1LQ9NYM9 111 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 POLR3KQ9Y2Y1 108 aaPredicted RBP10.35□□□□□ -0.75
CLK3-201ENST00000345005 TNCP24821 2201 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 C15orf62A8K5M9 175 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 BUB1B-PAK6H3BSN5 160 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 UPK2O00526 184 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 NPSP0C0P6 89 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 AREGP15514 252 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 HSPE1P61604 102 aaKnown RBP10.35□□□□□ -0.75
CLK3-201ENST00000345005 RHOBP62745 196 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 ZNF90Q03938 601 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 DIAPH2-AS1Q14236 149 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 TEX38Q6PEX7 206 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 TEX43Q6ZNM6 134 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 Q8N7P7 452 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 SLC24A4Q8NFF2 622 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 C22orf15Q8WYQ4 148 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 TBX15Q96SF7 602 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 TCF19Q9Y242 345 aa10.35□□□□□ -0.75
CLK3-201ENST00000345005 SRRM4A7MD48 611 aaKnown RBP10.34□□□□□ -0.75
CLK3-201ENST00000345005 CRISP2P16562 243 aa10.34□□□□□ -0.75
CLK3-201ENST00000345005 BRS3P32247 399 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms