RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TSTD3H0UI37 97 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 CTDSP2O14595 271 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 CST7O76096 145 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 DKK1O94907 266 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 RCC1P18754 421 aaPredicted RBP6.82□□□□□ -1.32
HMGB1-203ENST00000341423 ZNF680Q8NEM1 530 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 ZNF837Q96EG3 531 aaPredicted RBP6.82□□□□□ -1.32
HMGB1-203ENST00000341423 ZNF705GA8MUZ8 300 aaPredicted RBP6.82□□□□□ -1.32
HMGB1-203ENST00000341423 C9orf139Q6ZV77 190 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 ZNF431Q8TF32 576 aaPredicted RBP6.82□□□□□ -1.32
HMGB1-203ENST00000341423 NDUFA12Q9UI09 145 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 HEATR5BQ9P2D3 2071 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 TRAV21A0A0B4J279 112 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 AKAP14Q86UN6 197 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 A0A0J9YY99 117 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 CENPVL1A0A0U1RR11 272 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 CENPVL3A0A0U1RRI6 287 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 TGOLN2O43493 480 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 C8orf82Q6P1X6 216 aaPredicted RBP6.81□□□□□ -1.32
HMGB1-203ENST00000341423 ZNF562Q6V9R5 426 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 FUNDC2Q9BWH2 189 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 ZNF436Q9C0F3 470 aaPredicted RBP6.81□□□□□ -1.32
HMGB1-203ENST00000341423 LPAR5Q9H1C0 372 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 PLSCR2Q9NRY7 297 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 IGLV2-18A0A075B6J9 118 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 TNFRSF13BO14836 293 aaPredicted RBP6.81□□□□□ -1.32
HMGB1-203ENST00000341423 DANCRP0C864 163 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 CFHR3Q02985 330 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 Q8TCH9 128 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 WFDC12Q8WWY7 111 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 ZNRD1Q9P1U0 126 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 TRAV25A0A0B4J276 109 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 M0R381 172 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 SLC25A20O43772 301 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 FOLR2P14207 255 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 CDX1P47902 265 aaPredicted RBP6.81□□□□□ -1.32
HMGB1-203ENST00000341423 ZNF90Q03938 601 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 SSBP1Q04837 148 aaKnown RBP6.81□□□□□ -1.32
HMGB1-203ENST00000341423 C19orf35Q6ZS72 473 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 FLVCR1-AS1Q8TAF5 88 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 GAFA1Q96PS6 74 aa6.81□□□□□ -1.32
HMGB1-203ENST00000341423 C3orf84H3BNL1 204 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 NDUFA7O95182 113 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 IGHV3-48P01763 117 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 FSTP19883 344 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 GNG4P50150 75 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 SS18Q15532 418 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 RNF212Q495C1 297 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 ANGPTL6Q8NI99 470 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 FGFBP3Q8TAT2 258 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 A0A1W2PNU3 283 aaPredicted RBP6.8□□□□□ -1.32
HMGB1-203ENST00000341423 CDC42EP2O14613 210 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 ANXA2RQ3ZCQ2 193 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 PPP1R3EQ9H7J1 279 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 ZNF646O15015 1829 aaPredicted RBP6.8□□□□□ -1.32
HMGB1-203ENST00000341423 C4orf51C9J302 202 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 F8W036 122 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 SRSF10O75494 262 aaKnown RBP6.8□□□□□ -1.32
HMGB1-203ENST00000341423 IGHV2-70P01814 119 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 PSMB6P28072 239 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 ADIRFQ15847 76 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 LYPD4Q6UWN0 246 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 SOSTQ9BQB4 213 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 FBLN5Q9UBX5 448 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 MLNRO43193 412 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 EFNB2P52799 333 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 RAB5BP61020 215 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 ZAR1LA6NP61 321 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 LYRM1O43325 122 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 MUC21Q5SSG8 566 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 BCL6BQ8N143 479 aaPredicted RBP6.8□□□□□ -1.32
HMGB1-203ENST00000341423 MZB1Q8WU39 189 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 ADAT3Q96EY9 351 aaPredicted RBP6.8□□□□□ -1.32
HMGB1-203ENST00000341423 TMPRSS5Q9H3S3 457 aa6.8□□□□□ -1.32
HMGB1-203ENST00000341423 SAA2-SAA4A0A096LPE2 208 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 TGIF2-C20orf24A0A0A6YYL0 155 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 IGLV1-36A0A0B4J1U3 117 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 MFNGO00587 321 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 SAA2P0DJI9 122 aaPredicted RBP6.79□□□□□ -1.32
HMGB1-203ENST00000341423 DEFA5Q01523 94 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 Q6YL49 198 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 NKAPP1Q8N9T2 125 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 C4orf3Q8WVX3 66 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 RNF125Q96EQ8 232 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 H3BRM9 83 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 MT-ND4LP03901 98 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 SAA1P0DJI8 122 aaPredicted RBP6.79□□□□□ -1.32
HMGB1-203ENST00000341423 B3GALT5-AS1P59052 145 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 TMEM95Q3KNT9 176 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 MUC7Q8TAX7 377 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 RNASEH2CQ8TDP1 164 aaKnown RBP6.79□□□□□ -1.32
HMGB1-203ENST00000341423 MMP24Q9Y5R2 645 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 HLA-DQA1P01909 254 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 SLURP1P55000 103 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 OR4D11Q8NGI4 311 aa6.79□□□□□ -1.32
HMGB1-203ENST00000341423 ANKRD20A5PA0PJZ0 165 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 TWIST1Q15672 202 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 BAK1Q16611 211 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 TMEM128Q5BJH2 165 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 GPX7Q96SL4 187 aaPredicted RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms