RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ESPL1Q14674 2120 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 IFITM3Q01628 133 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 ICAM4Q14773 271 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 OR1N2Q8NGR9 330 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 TMEM190Q8WZ59 177 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 DEFB112Q30KQ8 113 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 ZNF562Q6V9R5 426 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 ZNF329Q86UD4 541 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 OR10W1Q8NGF6 305 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 COL4A2P08572 1712 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 LHBP01229 141 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 NBEAP1P0C6P0 100 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 LRTM2Q8N967 370 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 FREM3P0C091 2139 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 A8MWL6 223 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 SPINK4O60575 86 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 CAMPP49913 170 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 GOLT1AQ6ZVE7 132 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 H2BFSP57053 126 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 LCN12Q6JVE5 192 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 H3BTX0 84 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 NTF3P20783 257 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 LOXL1Q08397 574 aaPredicted RBP8.24□□□□□ -1.09
USP54-201ENST00000339859 FAM53AQ6NSI3 398 aaPredicted RBP8.24□□□□□ -1.09
USP54-201ENST00000339859 LHFPL1Q86WI0 220 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 OTORQ9NRC9 128 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 MUC6Q6W4X9 2439 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 A0A1B0GWJ7 208 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 FCN1O00602 326 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 FOXL1Q12952 345 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 SEC11CQ9BY50 192 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 SH3BGRL3Q9H299 93 aa8.24□□□□□ -1.09
USP54-201ENST00000339859 RP1L1Q8IWN7 2480 aaPredicted RBP8.23□□□□□ -1.09
USP54-201ENST00000339859 IGHV3OR16-8A0A075B7F1 116 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 CBY3A6NI87 242 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 OVOL1O14753 267 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 ATP6V0E1O15342 81 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 CXCL2P19875 107 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 MFAP2P55001 183 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 SDF2L1Q9HCN8 221 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 ACACAQ13085 2346 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 LINC00473A8K010 186 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 RPL29P47914 159 aaKnown RBP8.23□□□□□ -1.09
USP54-201ENST00000339859 EIF4E3Q8N5X7 224 aaKnown RBP8.23□□□□□ -1.09
USP54-201ENST00000339859 VN1R17PQ8TDU5 208 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 FMC1Q96HJ9 113 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 MYO7BQ6PIF6 2116 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 NPIPB6E9PJ23 425 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 ZNF880Q6PDB4 577 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 LHFPL5Q8TAF8 219 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 C22orf46C9J442 243 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 YTHDF2Q9Y5A9 579 aaKnown RBP8.23□□□□□ -1.09
USP54-201ENST00000339859 A0A0B4J293 547 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 TRGC1P0CF51 173 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 ASIPP42127 132 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 C10orf55Q5SWW7 151 aa8.23□□□□□ -1.09
USP54-201ENST00000339859 RNASE4P34096 147 aaKnown RBP8.22□□□□□ -1.09
USP54-201ENST00000339859 C2orf68Q2NKX9 166 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 TMEM18Q96B42 140 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 SDHCQ99643 169 aaPredicted RBP8.22□□□□□ -1.09
USP54-201ENST00000339859 ZNF581Q9P0T4 197 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 AMTP48728 403 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 TCL1AP56279 114 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 RELBQ01201 579 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 TRGV9Q99603 122 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 CTSZQ9UBR2 303 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 TSSC4Q9Y5U2 329 aaPredicted RBP8.22□□□□□ -1.09
USP54-201ENST00000339859 H3BUA1 57 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 WISP2O76076 250 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 NDUFB4O95168 129 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 ELANEP08246 267 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 IBA57Q5T440 356 aaKnown RBP8.22□□□□□ -1.09
USP54-201ENST00000339859 TMEM158Q8WZ71 300 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 ZNF586Q9NXT0 402 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 RNASEKQ6P5S7 137 aaKnown RBP8.22□□□□□ -1.09
USP54-201ENST00000339859 CYB561D1Q8N8Q1 229 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 OR11H6Q8NGC7 330 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 OR4D5Q8NGN0 318 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 PCP4L1A6NKN8 68 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 MEF2BQ02080 365 aaPredicted RBP8.22□□□□□ -1.09
USP54-201ENST00000339859 AMMECR1LQ6DCA0 310 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 C11orf53Q8IXP5 236 aa8.22□□□□□ -1.09
USP54-201ENST00000339859 HSPB1P04792 205 aaKnown RBP8.21□□□□□ -1.09
USP54-201ENST00000339859 Q9H3A6 140 aa8.21□□□□□ -1.09
USP54-201ENST00000339859 C15orf65H3BRN8 121 aa8.21□□□□□ -1.09
USP54-201ENST00000339859 KCNS1Q96KK3 526 aa8.21□□□□□ -1.1
USP54-201ENST00000339859 FAM74A7A6NL05 159 aa8.21□□□□□ -1.1
USP54-201ENST00000339859 OR11H12B2RN74 326 aa8.21□□□□□ -1.1
USP54-201ENST00000339859 TOMM40O96008 361 aa8.21□□□□□ -1.1
USP54-201ENST00000339859 DANCRP0C864 163 aa8.21□□□□□ -1.1
USP54-201ENST00000339859 CRYBB3P26998 211 aa8.21□□□□□ -1.1
USP54-201ENST00000339859 PSMG4Q5JS54 123 aa8.21□□□□□ -1.1
USP54-201ENST00000339859 Q6ZN92 141 aa8.21□□□□□ -1.1
USP54-201ENST00000339859 HSBP1O75506 76 aa8.2□□□□□ -1.1
USP54-201ENST00000339859 DAZ1Q9NQZ3 744 aaKnown RBP8.2□□□□□ -1.1
USP54-201ENST00000339859 RIF1Q5UIP0 2472 aaKnown RBP8.2□□□□□ -1.1
USP54-201ENST00000339859 TRAV3A0A0B4J244 114 aa8.2□□□□□ -1.1
USP54-201ENST00000339859 SNCGO76070 127 aa8.2□□□□□ -1.1
USP54-201ENST00000339859 ID3Q02535 119 aa8.2□□□□□ -1.1
USP54-201ENST00000339859 H7C1H1 209 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms