RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.62□□□□□ -0.87
VPS39-201ENST00000318006 SNHG12Q9BXW3 62 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 RNF115Q9Y4L5 304 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 CECR9P0C854 216 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 C3orf79P0CE67 100 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 LYL1P12980 280 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 OR9G1Q8NH87 305 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 C20orf144Q9BQM9 153 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 KIF26BQ2KJY2 2108 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 HOXA3O43365 443 aaPredicted RBP9.62□□□□□ -0.87
VPS39-201ENST00000318006 GPX1P07203 203 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 LEPP41159 167 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 EBLN2Q6P2I7 272 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 C1orf162Q8NEQ5 155 aaPredicted RBP9.62□□□□□ -0.87
VPS39-201ENST00000318006 A8MWV9 139 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 DPM2O94777 84 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 NDUFA3O95167 84 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 GATA2P23769 480 aaPredicted RBP9.62□□□□□ -0.87
VPS39-201ENST00000318006 LHX2P50458 406 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 FER1L6-AS1Q8NA97 138 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 RNASEH2CQ8TDP1 164 aaKnown RBP9.62□□□□□ -0.87
VPS39-201ENST00000318006 TSKUQ8WUA8 353 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 COX11Q9Y6N1 276 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 GAGE12BA1L429 117 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 PSG1P11464 419 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 ERVK11-1P61568 191 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 MST1LQ2TV78 715 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 Q9H3A6 140 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 WNT9BO14905 357 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 DNM1P46Q6ZS02 220 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 GFRA3O60609 400 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 SLC25A2Q9BXI2 301 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 CRIM1Q9NZV1 1036 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 ZNF318Q5VUA4 2279 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 PLXNA3P51805 1871 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 GAGE2BQ13066 116 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 GAGE2EQ4V326 116 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 ZFAND6Q6FIF0 208 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 GTSF1LQ9H1H1 148 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 DEPPQ9NTK1 212 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 GAGE2DQ9UEU5 116 aa9.61□□□□□ -0.87
VPS39-201ENST00000318006 MUC21A0A0G2JKD1 596 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 MUC21A0A140T8X8 626 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 C9JCJ5 164 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 EFNB3Q15768 340 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 MUC21Q5SSG8 566 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 MRAP2Q96G30 205 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 GPR179Q6PRD1 2367 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 TMEM95Q3KNT9 176 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 RASL11AQ6T310 242 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 SFTA2Q6UW10 78 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 IFI27L1Q96BM0 104 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 COQ2Q96H96 371 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 EPDR1Q9UM22 224 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 MED12Q93074 2177 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 FAM166AQ6J272 317 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 ACP7Q6ZNF0 438 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 RPP25LQ8N5L8 163 aaKnown RBP9.6□□□□□ -0.87
VPS39-201ENST00000318006 ZNRF1Q8ND25 227 aa9.6□□□□□ -0.87
VPS39-201ENST00000318006 NAA38Q9BRA0 125 aaKnown RBP9.6□□□□□ -0.87
VPS39-201ENST00000318006 POLR3KQ9Y2Y1 108 aaPredicted RBP9.6□□□□□ -0.87
VPS39-201ENST00000318006 C9JQL5 133 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 CD5LO43866 347 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 PSG7Q13046 419 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 OR13A1Q8NGR1 328 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 OTORQ9NRC9 128 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 IGHV2-5P01817 119 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 IGHV1-2P23083 117 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 GNG5P63218 68 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 FAM27E3Q08E93 113 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 ZNF56Q15929 161 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 LCN12Q6JVE5 192 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 OR10W1Q8NGF6 305 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 CACNA1DQ01668 2161 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 EFNA2O43921 213 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 RNASE1P07998 156 aaKnown RBP9.59□□□□□ -0.87
VPS39-201ENST00000318006 NXT2Q9NPJ8 142 aaKnown RBP9.59□□□□□ -0.87
VPS39-201ENST00000318006 ACACAQ13085 2346 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 ITGB1BP1O14713 200 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 PPBPP02775 128 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 CD33P20138 364 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 OCIAD2Q56VL3 154 aa9.59□□□□□ -0.87
VPS39-201ENST00000318006 MRPL27Q9P0M9 148 aaKnown RBP9.59□□□□□ -0.87
VPS39-201ENST00000318006 FAM106CPP0CH98 169 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 FAM74A4Q5TZK3 123 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 FAM90A2PQ658T7 463 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 WBP1Q96G27 269 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 PPIAL4CA0A0B4J2A2 164 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 IGHV2OR16-5A0A0B4J2B6 119 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 NPIPB11E5RHQ5 1161 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 IGKCP01834 107 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 PPIAL4GP0DN37 164 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 LYZL4Q96KX0 146 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 NCOR1P1Q9H4R4 102 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 ZNF319Q9P2F9 582 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 TSC2P49815 1807 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 NLRC5Q86WI3 1866 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 TRAV8-4A0A0B4J246 113 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 KBTBD11-OT1A0A1B0GTJ5 212 aa9.58□□□□□ -0.88
VPS39-201ENST00000318006 M0R381 172 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms