RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CDK2AP2O75956 126 aa11.67□□□□□ -0.54
CSPG4-201ENST00000308508 PDLIM4P50479 330 aa11.67□□□□□ -0.54
CSPG4-201ENST00000308508 UBE2V1Q13404 147 aa11.67□□□□□ -0.54
CSPG4-201ENST00000308508 CST9LQ9H4G1 147 aa11.67□□□□□ -0.54
CSPG4-201ENST00000308508 DOCK10Q96BY6 2186 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 C12orf77C9JDV5 145 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 POLEQ07864 2286 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 IGKV1D-33P01593 117 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 IGKV1-33P01594 117 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 LHFPL4Q7Z7J7 247 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 PPP1R27Q86WC6 154 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 CITED1Q99966 193 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 GFRA3O60609 400 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 AMBPP02760 352 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 SRSF3P84103 164 aaKnown RBP11.66□□□□□ -0.54
CSPG4-201ENST00000308508 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.66□□□□□ -0.54
CSPG4-201ENST00000308508 C2orf82Q6UX34 121 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 RNF126Q9BV68 326 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 DPM3Q9P2X0 92 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 TRBV24-1A0A075B6N3 115 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 CELA2AP08217 269 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 FBXL15Q9H469 300 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 EVI2AP22794 236 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 PVRIGQ6DKI7 326 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 A0A1B0GTI1 187 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 GNG5P63218 68 aa11.66□□□□□ -0.54
CSPG4-201ENST00000308508 ARID2Q68CP9 1835 aa11.65□□□□□ -0.54
CSPG4-201ENST00000308508 FHL5Q5TD97 284 aa11.65□□□□□ -0.54
CSPG4-201ENST00000308508 ZNHIT1O43257 154 aa11.65□□□□□ -0.54
CSPG4-201ENST00000308508 SPINK8P0C7L1 97 aa11.65□□□□□ -0.54
CSPG4-201ENST00000308508 MYOD1P15172 320 aa11.65□□□□□ -0.54
CSPG4-201ENST00000308508 GFI1BQ5VTD9 330 aa11.65□□□□□ -0.54
CSPG4-201ENST00000308508 FAM90A1Q86YD7 464 aa11.65□□□□□ -0.54
CSPG4-201ENST00000308508 PROB1E7EW31 1015 aa11.65□□□□□ -0.54
CSPG4-201ENST00000308508 BCL6BQ8N143 479 aaPredicted RBP11.65□□□□□ -0.54
CSPG4-201ENST00000308508 WBP1LQ9NX94 342 aa11.65□□□□□ -0.54
CSPG4-201ENST00000308508 GATD1Q8NB37 220 aa11.65□□□□□ -0.54
CSPG4-201ENST00000308508 GAGE12BA1L429 117 aa11.65□□□□□ -0.55
CSPG4-201ENST00000308508 TEX38Q6PEX7 206 aa11.65□□□□□ -0.55
CSPG4-201ENST00000308508 DNAJC30Q96LL9 226 aa11.65□□□□□ -0.55
CSPG4-201ENST00000308508 CCL19Q99731 98 aa11.65□□□□□ -0.55
CSPG4-201ENST00000308508 CLEC19AQ6UXS0 136 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 PARP14Q460N5 1801 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 LOC101059948A0A1B0GTJ6 334 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 TCRBV4S1A1TA0A5B7 111 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 C15orf61A6NNL5 157 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 PEMTQ9UBM1 199 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 ZNF831Q5JPB2 1677 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 FOXL1Q12952 345 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 Q6ZT83 130 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 C1QL2Q7Z5L3 287 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 OCC1Q8TAD7 63 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 TMEM167AQ8TBQ9 72 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 JPT2Q9H910 190 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 ITGB1BP1O14713 200 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 GREB1Q4ZG55 1949 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 DOCK7Q96N67 2140 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 VWC2LB2RUY7 222 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 TIMP3P35625 211 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 LINC00158P58513 81 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 FGF16O43320 207 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 ATP5J2P56134 94 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 SLC25A48Q6ZT89 311 aaKnown RBP11.64□□□□□ -0.55
CSPG4-201ENST00000308508 LAMTOR3Q9UHA4 124 aa11.64□□□□□ -0.55
CSPG4-201ENST00000308508 GLRXP35754 106 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 DTX2Q86UW9 622 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 S4R3C0 116 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 LAIR2Q6ISS4 152 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 RSPO3Q9BXY4 272 aaPredicted RBP11.63□□□□□ -0.55
CSPG4-201ENST00000308508 PLXNA1Q9UIW2 1896 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 RHOGP84095 191 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 PLEKHB2Q96CS7 222 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 FAM90A9PA6NNJ1 464 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 CTHRC1Q96CG8 243 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 GP6Q9HCN6 339 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 A0A0G2JK05 382 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 A0A0G2JMM0 328 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 A0A1W2PPB8 328 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 ADARB2-AS1A8MUL3 147 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 KIR3DP1A8MWS1 328 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 NRN1LQ496H8 165 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 FAM90A2PQ658T7 463 aa11.63□□□□□ -0.55
CSPG4-201ENST00000308508 GUSBP1Q15486 140 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 CD300EQ496F6 205 aaPredicted RBP11.62□□□□□ -0.55
CSPG4-201ENST00000308508 MYLKQ15746 1914 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 TRGV11A0A075B6L2 103 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 CD5P06127 495 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 CEACAM1P13688 526 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 APOBEC3AP31941 199 aaPredicted RBP11.62□□□□□ -0.55
CSPG4-201ENST00000308508 RNF125Q96EQ8 232 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 PSG8Q9UQ74 426 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 ITGBL1O95965 494 aaPredicted RBP11.62□□□□□ -0.55
CSPG4-201ENST00000308508 GATA2P23769 480 aaPredicted RBP11.62□□□□□ -0.55
CSPG4-201ENST00000308508 EFNB3Q15768 340 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 PSME4Q14997 1843 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 ACTL10Q5JWF8 245 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 PLSCR4Q9NRQ2 329 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 LINC00312Q9Y6C7 94 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 A0A1B0GW64 132 aa11.62□□□□□ -0.55
CSPG4-201ENST00000308508 DUSP14O95147 198 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms