RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 JKAMPQ9P055 326 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 ZNRD1Q9P1U0 126 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 G3V3Q6 166 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 ZNF439Q8NDP4 499 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 FOXC2Q99958 501 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 C20orf202A1L168 122 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 H0Y8G0 127 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 IL6RP08887 468 aaPredicted RBP7.53□□□□□ -1.2
PTPRE-202ENST00000306042 SFTA3P0C7M3 94 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 RAB5AP20339 215 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 GCSHP23434 173 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 CTSZQ9UBR2 303 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 COL5A1P20908 1838 aaPredicted RBP7.53□□□□□ -1.2
PTPRE-202ENST00000306042 SPINK4O60575 86 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 MGPP08493 103 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 KLF17Q5JT82 389 aaPredicted RBP7.53□□□□□ -1.2
PTPRE-202ENST00000306042 FAM120AOSQ5T036 256 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 SYT8Q8NBV8 401 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 RNF125Q96EQ8 232 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 FAM210AQ96ND0 272 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 RPRMQ9NS64 109 aa7.53□□□□□ -1.2
PTPRE-202ENST00000306042 SPSB3Q6PJ21 355 aa7.52□□□□□ -1.2
PTPRE-202ENST00000306042 TMEM144Q7Z5S9 345 aa7.52□□□□□ -1.2
PTPRE-202ENST00000306042 RAB24Q969Q5 203 aa7.52□□□□□ -1.2
PTPRE-202ENST00000306042 SHANK1Q9Y566 2161 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 ZNF705FA8MVS1 300 aaPredicted RBP7.52□□□□□ -1.21
PTPRE-202ENST00000306042 DANCRP0C864 163 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 ZNF705DP0CH99 300 aaPredicted RBP7.52□□□□□ -1.21
PTPRE-202ENST00000306042 ZNF705BP0CI00 300 aaPredicted RBP7.52□□□□□ -1.21
PTPRE-202ENST00000306042 BTN1A1Q13410 526 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 LGALSLQ3ZCW2 172 aaPredicted RBP7.52□□□□□ -1.21
PTPRE-202ENST00000306042 Q6ZS49 121 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 AQP10Q96PS8 301 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 TNRC6AQ8NDV7 1962 aaKnown RBP7.52□□□□□ -1.21
PTPRE-202ENST00000306042 LINC00473A8K010 186 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 H2BFSP57053 126 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 ZNF562Q6V9R5 426 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 FAM110DQ8TAY7 271 aaPredicted RBP7.52□□□□□ -1.21
PTPRE-202ENST00000306042 GPR82Q96P67 336 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 HIVEP3Q5T1R4 2406 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 GUSBP1Q15486 140 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 HSPB7Q9UBY9 170 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 VPREB3Q9UKI3 123 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 EPG5Q9HCE0 2579 aa7.52□□□□□ -1.21
PTPRE-202ENST00000306042 TRBV7-1A0A0A6YYK4 115 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 MFSD2BA6NFX1 497 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 FAM223BA6NKX1 122 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 CAMPP49913 170 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 FAM223AQ8IWN6 122 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 IGKV1-16P04430 117 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 ARL14EPLP0DKL9 152 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 ICAM4Q14773 271 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 C17orf58Q2M2W7 97 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 FAM159AQ6UWV7 190 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 OR2D3Q8NGH3 330 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 PRDM13Q9H4Q3 707 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 FOXI3A8MTJ6 420 aaPredicted RBP7.51□□□□□ -1.21
PTPRE-202ENST00000306042 IGHV4-59P01825 116 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 NBEAP1P0C6P0 100 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 FAM162BQ5T6X4 162 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 UQCC3Q6UW78 93 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 OR52E5Q8NH55 327 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 TXNDC17Q9BRA2 123 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 NPCDR1Q9BY65 106 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 NAT8Q9UHE5 227 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 TMEM189A5PLL7 270 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 ATP6V0E1O15342 81 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 BSXQ3C1V8 233 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 LINC00311Q8N616 119 aa7.51□□□□□ -1.21
PTPRE-202ENST00000306042 PEF1Q9UBV8 284 aaKnown RBP7.51□□□□□ -1.21
PTPRE-202ENST00000306042 ZFYVE26Q68DK2 2539 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 A0A0B4J293 547 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 IGLV3-1P01715 115 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 GATA2P23769 480 aaPredicted RBP7.5□□□□□ -1.21
PTPRE-202ENST00000306042 RIGQ13278 110 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 SPRNQ5BIV9 151 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 OR10G8Q8NGN5 311 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 GOLT1AQ6ZVE7 132 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 C1QTNF4Q9BXJ3 329 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 FUT9Q9Y231 359 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 HLA-DRB1P01911 266 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 HSPB1P04792 205 aaKnown RBP7.5□□□□□ -1.21
PTPRE-202ENST00000306042 HOXB4P17483 251 aaPredicted RBP7.5□□□□□ -1.21
PTPRE-202ENST00000306042 MFAP2P55001 183 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 TCL1AP56279 114 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 LINC00205P59089 165 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 CLLU1Q5K131 121 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 FA2HQ7L5A8 372 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 C11orf53Q8IXP5 236 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 TMEM116Q8NCL8 245 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 SGMS2Q8NHU3 365 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 EMP1P54849 157 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 SHISA2Q6UWI4 295 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 LHFPL1Q86WI0 220 aa7.5□□□□□ -1.21
PTPRE-202ENST00000306042 LOXL1Q08397 574 aaPredicted RBP7.49□□□□□ -1.21
PTPRE-202ENST00000306042 HERPUD1Q15011 391 aa7.49□□□□□ -1.21
PTPRE-202ENST00000306042 TCF24Q7RTU0 167 aa7.49□□□□□ -1.21
PTPRE-202ENST00000306042 WFDC11Q8NEX6 87 aa7.49□□□□□ -1.21
PTPRE-202ENST00000306042 SDHCQ99643 169 aaPredicted RBP7.49□□□□□ -1.21
PTPRE-202ENST00000306042 NAT8BQ9UHF3 227 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms