RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 ASIPP42127 132 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 C10orf91Q5T1B1 145 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 OR2K2Q8NGT1 345 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 FGFBP3Q8TAT2 258 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 RNF115Q9Y4L5 304 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 XIRP1Q702N8 1843 aaKnown RBP10.69□□□□□ -0.7
COL3A1-201ENST00000304636 B9A039 149 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 HSD52Q0P140 79 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 RTN4RL2Q86UN3 420 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 C21orf62Q9NYP8 219 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 UBE2L6O14933 153 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 ATP1A1-AS1Q5TC04 95 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 NUDT10Q8NFP7 164 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 NUDT11Q96G61 164 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 TMEM50AO95807 157 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 Q5PR19 223 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 FAM74A4Q5TZK3 123 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 Q6ZS49 121 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 OR5AN1Q8NGI8 311 aa10.69□□□□□ -0.7
COL3A1-201ENST00000304636 NHP2Q9NX24 153 aaKnown RBP10.69□□□□□ -0.7
COL3A1-201ENST00000304636 SPSB3Q6PJ21 355 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 GEMIN7Q9H840 131 aaKnown RBP10.68□□□□□ -0.7
COL3A1-201ENST00000304636 A8MWP6 167 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 TYMSP04818 313 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 TPRP12270 2363 aaKnown RBP10.68□□□□□ -0.7
COL3A1-201ENST00000304636 TRBV6-6A0A0A6YYG2 114 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 M0R381 172 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 NDUFA3O95167 84 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 PPBPP02775 128 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 RNF144BQ7Z419 303 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 DPM3Q9P2X0 92 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 IGHV3-35A0A0C4DH35 117 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 TDGF1P3P51864 188 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 TMEM190Q8WZ59 177 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 SIGMAR1Q99720 223 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 NXT2Q9NPJ8 142 aaKnown RBP10.68□□□□□ -0.7
COL3A1-201ENST00000304636 FTH1P19P0C7X4 201 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 TMEM42Q69YG0 159 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 PVRIGQ6DKI7 326 aa10.68□□□□□ -0.7
COL3A1-201ENST00000304636 DPM2O94777 84 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 FAM169BQ8N8A8 192 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 MRPS16Q9Y3D3 137 aaKnown RBP10.67□□□□□ -0.7
COL3A1-201ENST00000304636 KIF26BQ2KJY2 2108 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 FABP5P3A8MUU1 101 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 OR9G4Q8NGQ1 327 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 DDB2Q92466 427 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 IGKV3D-15A0A087WSY6 115 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 IGKV3-15P01624 115 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 CACNG7P62955 275 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 COQ2Q96H96 371 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 MGST2Q99735 147 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 FBXL7Q9UJT9 491 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 IGHV2-70P01814 119 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 MEIG1Q5JSS6 88 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 KLHDC3Q9BQ90 382 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 MRPL27Q9P0M9 148 aaKnown RBP10.67□□□□□ -0.7
COL3A1-201ENST00000304636 PSG8Q9UQ74 426 aa10.67□□□□□ -0.7
COL3A1-201ENST00000304636 APOMO95445 188 aa10.66□□□□□ -0.7
COL3A1-201ENST00000304636 C10orf126Q8N4M7 172 aa10.66□□□□□ -0.7
COL3A1-201ENST00000304636 RIPPLY3P57055 190 aa10.66□□□□□ -0.7
COL3A1-201ENST00000304636 ARTNQ5T4W7 220 aa10.66□□□□□ -0.7
COL3A1-201ENST00000304636 PRR7Q8TB68 274 aa10.66□□□□□ -0.7
COL3A1-201ENST00000304636 ASCL2Q99929 193 aa10.66□□□□□ -0.7
COL3A1-201ENST00000304636 C3orf79P0CE67 100 aa10.66□□□□□ -0.7
COL3A1-201ENST00000304636 UBE2V1Q13404 147 aa10.66□□□□□ -0.7
COL3A1-201ENST00000304636 SPATA31B1PQ5VZV4 182 aa10.66□□□□□ -0.7
COL3A1-201ENST00000304636 APOBEC3AP31941 199 aaPredicted RBP10.66□□□□□ -0.7
COL3A1-201ENST00000304636 IGHV3-23P01764 117 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 ERVK11-1P61568 191 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 SLC25A2Q9BXI2 301 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 SEPSECSQ9HD40 501 aaKnown RBP10.65□□□□□ -0.7
COL3A1-201ENST00000304636 S4R3C0 116 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 H7C1H1 209 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 FOXF2Q12947 444 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 SLC25A48Q6ZT89 311 aaKnown RBP10.65□□□□□ -0.7
COL3A1-201ENST00000304636 ARPC1AQ92747 370 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 IFI27L1Q96BM0 104 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 C5orf63A6NC05 138 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 IGKV1D-33P01593 117 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 IGKV1-33P01594 117 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 SFTPCP11686 197 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 FDCSPQ8NFU4 85 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 SRSF1Q07955 248 aaKnown RBP eCLIP10.65□□□□□ -0.7
COL3A1-201ENST00000304636 LINC01559Q495D7 138 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 SAMD5Q5TGI4 173 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 C8orf46Q8TAG6 207 aa10.65□□□□□ -0.7
COL3A1-201ENST00000304636 BRWD3Q6RI45 1802 aa10.65□□□□□ -0.71
COL3A1-201ENST00000304636 IGHV3OR16-13A0A075B7E8 117 aa10.65□□□□□ -0.71
COL3A1-201ENST00000304636 IGHV3-74A0A0B4J1X5 117 aa10.65□□□□□ -0.71
COL3A1-201ENST00000304636 EREGO14944 169 aa10.65□□□□□ -0.71
COL3A1-201ENST00000304636 IGKCP01834 107 aa10.65□□□□□ -0.71
COL3A1-201ENST00000304636 SNRPD3P62318 126 aaKnown RBP10.65□□□□□ -0.71
COL3A1-201ENST00000304636 SEMA5BQ9P283 1151 aa10.65□□□□□ -0.71
COL3A1-201ENST00000304636 TRAV5A0A0B4J249 113 aa10.64□□□□□ -0.71
COL3A1-201ENST00000304636 RNF125Q96EQ8 232 aa10.64□□□□□ -0.71
COL3A1-201ENST00000304636 CRIM1Q9NZV1 1036 aa10.64□□□□□ -0.71
COL3A1-201ENST00000304636 ANAPC10Q9UM13 185 aa10.64□□□□□ -0.71
COL3A1-201ENST00000304636 SBF1O95248 1867 aa10.64□□□□□ -0.71
COL3A1-201ENST00000304636 IGHV2-5P01817 119 aa10.64□□□□□ -0.71
COL3A1-201ENST00000304636 ZNF585BQ52M93 769 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms