RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 NPY1RP25929 384 aa10.68□□□□□ -0.7
CCDC88B-201ENST00000301897 CRYBB3P26998 211 aa10.68□□□□□ -0.7
CCDC88B-201ENST00000301897 HRH1P35367 487 aa10.68□□□□□ -0.7
CCDC88B-201ENST00000301897 NUTF2P61970 127 aaKnown RBP10.68□□□□□ -0.7
CCDC88B-201ENST00000301897 LYSMD2Q8IV50 215 aa10.68□□□□□ -0.7
CCDC88B-201ENST00000301897 SLC35G3Q8N808 338 aa10.68□□□□□ -0.7
CCDC88B-201ENST00000301897 NDUFAF3Q9BU61 184 aa10.68□□□□□ -0.7
CCDC88B-201ENST00000301897 X6R8D5 127 aa10.68□□□□□ -0.7
CCDC88B-201ENST00000301897 FAT2Q9NYQ8 4349 aa10.68□□□□□ -0.7
CCDC88B-201ENST00000301897 A0A1B0GU03 582 aa10.67□□□□□ -0.7
CCDC88B-201ENST00000301897 ATG12O94817 140 aa10.67□□□□□ -0.7
CCDC88B-201ENST00000301897 ZNF688P0C7X2 276 aa10.67□□□□□ -0.7
CCDC88B-201ENST00000301897 C4BPBP20851 252 aa10.67□□□□□ -0.7
CCDC88B-201ENST00000301897 P2RY1P47900 373 aa10.67□□□□□ -0.7
CCDC88B-201ENST00000301897 UCP3P55916 312 aa10.67□□□□□ -0.7
CCDC88B-201ENST00000301897 TAS2R20P59543 309 aa10.67□□□□□ -0.7
CCDC88B-201ENST00000301897 MRGPRFQ96AM1 343 aa10.67□□□□□ -0.7
CCDC88B-201ENST00000301897 HELTA6NFD8 242 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 KNCNA6PVL3 124 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 CLN5O75503 358 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 IGKV1-39P01597 117 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 IGKV1D-39P04432 117 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 AP2S1P53680 142 aaPredicted RBP10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 LGALS9BQ3B8N2 356 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 ACTL10Q5JWF8 245 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 SAMD12Q8N8I0 201 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 CSNK1G2-AS1Q8NCQ2 148 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 OR4X1Q8NH49 305 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 DCANP1Q8TF63 244 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 TMEM230Q96A57 120 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 PDCD10Q9BUL8 212 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 DNAH2Q9P225 4427 aa10.66□□□□□ -0.7
CCDC88B-201ENST00000301897 DNAH17Q9UFH2 4485 aa10.65□□□□□ -0.7
CCDC88B-201ENST00000301897 TRAV30A0A087WSZ9 112 aa10.65□□□□□ -0.7
CCDC88B-201ENST00000301897 IFNA17P01571 189 aa10.65□□□□□ -0.7
CCDC88B-201ENST00000301897 HLA-DMAP28067 261 aa10.65□□□□□ -0.7
CCDC88B-201ENST00000301897 RPL5P46777 297 aaKnown RBP10.65□□□□□ -0.7
CCDC88B-201ENST00000301897 C12orf74Q32Q52 190 aa10.65□□□□□ -0.7
CCDC88B-201ENST00000301897 ENY2Q9NPA8 101 aa10.65□□□□□ -0.7
CCDC88B-201ENST00000301897 RTL8CO15255 209 aa10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 RPS19P39019 145 aaKnown RBP10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 OPRK1P41145 380 aa10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 RND3P61587 244 aa10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 SNRPD3P62318 126 aaKnown RBP10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 DHRS2Q13268 280 aa10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 GPX8Q8TED1 209 aa10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 ZNF486Q96H40 463 aaPredicted RBP10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 FAM210BQ96KR6 192 aa10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 RAB40CQ96S21 281 aa10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 SCPEP1Q9HB40 452 aa10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 SEPSECSQ9HD40 501 aaKnown RBP10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 CLEC5AQ9NY25 188 aa10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 CELA1Q9UNI1 258 aa10.64□□□□□ -0.71
CCDC88B-201ENST00000301897 SMIM31A0A1B0GVY4 71 aa10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 RPS10-NUDT3A0A1W2PQS6 291 aa10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 TMEM189A5PLL7 270 aa10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 IFNA21P01568 189 aa10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 RNASE2P10153 161 aaKnown RBP10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 RCVRNP35243 200 aa10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 TGFBR1P36897 503 aa10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 HOXA1P49639 335 aaPredicted RBP10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 AKR1C2P52895 323 aa10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 NEDD8Q15843 81 aa10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 SPINK9Q5DT21 86 aa10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 PSMG4Q5JS54 123 aa10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 SOHLH1Q5JUK2 328 aa10.63□□□□□ -0.71
CCDC88B-201ENST00000301897 A0A0B4J293 547 aa10.62□□□□□ -0.71
CCDC88B-201ENST00000301897 TEX48A0A1B0GUV7 120 aa10.62□□□□□ -0.71
CCDC88B-201ENST00000301897 IFNA10P01566 189 aa10.62□□□□□ -0.71
CCDC88B-201ENST00000301897 IGKV1-17P01599 117 aa10.62□□□□□ -0.71
CCDC88B-201ENST00000301897 P0C879 139 aa10.62□□□□□ -0.71
CCDC88B-201ENST00000301897 PPP5CP53041 499 aa10.62□□□□□ -0.71
CCDC88B-201ENST00000301897 NEU1Q99519 415 aa10.62□□□□□ -0.71
CCDC88B-201ENST00000301897 U3KQE9 123 aa10.62□□□□□ -0.71
CCDC88B-201ENST00000301897 M0R2N4 97 aa10.61□□□□□ -0.71
CCDC88B-201ENST00000301897 IGKV1-5P01602 117 aa10.61□□□□□ -0.71
CCDC88B-201ENST00000301897 HNRNPCP07910 306 aaKnown RBP eCLIP10.61□□□□□ -0.71
CCDC88B-201ENST00000301897 SPART-AS1P0CW21 52 aa10.61□□□□□ -0.71
CCDC88B-201ENST00000301897 PGAM2P15259 253 aa10.61□□□□□ -0.71
CCDC88B-201ENST00000301897 IZUMO4Q1ZYL8 232 aa10.61□□□□□ -0.71
CCDC88B-201ENST00000301897 C16orf54Q6UWD8 224 aa10.61□□□□□ -0.71
CCDC88B-201ENST00000301897 OR1S2Q8NGQ3 325 aa10.61□□□□□ -0.71
CCDC88B-201ENST00000301897 Q8WTZ3 238 aa10.61□□□□□ -0.71
CCDC88B-201ENST00000301897 RRNAD1Q96FB5 475 aaKnown RBP10.61□□□□□ -0.71
CCDC88B-201ENST00000301897 FNDC4Q9H6D8 234 aaPredicted RBP10.61□□□□□ -0.71
CCDC88B-201ENST00000301897 SMIM9A6NGZ8 99 aa10.6□□□□□ -0.71
CCDC88B-201ENST00000301897 GSTZ1O43708 216 aaPredicted RBP10.6□□□□□ -0.71
CCDC88B-201ENST00000301897 SLC25A4P12235 298 aa10.6□□□□□ -0.71
CCDC88B-201ENST00000301897 YPEL3P61236 119 aaPredicted RBP10.6□□□□□ -0.71
CCDC88B-201ENST00000301897 BSXQ3C1V8 233 aa10.6□□□□□ -0.71
CCDC88B-201ENST00000301897 TIGITQ495A1 244 aa10.6□□□□□ -0.71
CCDC88B-201ENST00000301897 UBE2DNLQ8IWF7 75 aa10.6□□□□□ -0.71
CCDC88B-201ENST00000301897 GLMPQ8WWB7 406 aa10.6□□□□□ -0.71
CCDC88B-201ENST00000301897 NRN1Q9NPD7 142 aa10.6□□□□□ -0.71
CCDC88B-201ENST00000301897 XCL2Q9UBD3 114 aa10.6□□□□□ -0.71
CCDC88B-201ENST00000301897 PKD1P98161 4303 aa10.59□□□□□ -0.71
CCDC88B-201ENST00000301897 FAM90A26D6RGX4 464 aa10.59□□□□□ -0.71
CCDC88B-201ENST00000301897 H3BMM0 161 aa10.59□□□□□ -0.71
CCDC88B-201ENST00000301897 B3GALNT1O75752 331 aa10.59□□□□□ -0.71
CCDC88B-201ENST00000301897 APOA1P02647 267 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms