RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 VMA21Q3ZAQ7 101 aa13.15□□□□□ -0.3
SDCBP-201ENST00000260130 AKR1C8PQ5T2L2 129 aa13.15□□□□□ -0.3
SDCBP-201ENST00000260130 TEX45Q8NA69 505 aa13.15□□□□□ -0.3
SDCBP-201ENST00000260130 TCRBV4S1A1TA0A5B7 111 aa13.15□□□□□ -0.3
SDCBP-201ENST00000260130 PGLYRP1O75594 196 aaPredicted RBP13.15□□□□□ -0.3
SDCBP-201ENST00000260130 OPN1MWP04001 364 aa13.15□□□□□ -0.3
SDCBP-201ENST00000260130 OPN1MW2P0DN77 364 aa13.15□□□□□ -0.3
SDCBP-201ENST00000260130 OPN1MW3P0DN78 364 aa13.15□□□□□ -0.3
SDCBP-201ENST00000260130 NDPQ00604 133 aa13.15□□□□□ -0.3
SDCBP-201ENST00000260130 NSUN5P1Q3KNT7 163 aa13.15□□□□□ -0.3
SDCBP-201ENST00000260130 TEX38Q6PEX7 206 aa13.15□□□□□ -0.3
SDCBP-201ENST00000260130 DFFBO76075 338 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 CST7O76096 145 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 CCL20P78556 96 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 CFHR3Q02985 330 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 OR51H1Q8NH63 302 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 ATP5SQ99766 215 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 HIPK2Q9H2X6 1198 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 TSSC4Q9Y5U2 329 aaPredicted RBP13.14□□□□□ -0.31
SDCBP-201ENST00000260130 WSB1Q9Y6I7 421 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 PKD1L1Q8TDX9 2849 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 G3V318 75 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 RAMP3O60896 148 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 HSPB1P04792 205 aaKnown RBP13.14□□□□□ -0.31
SDCBP-201ENST00000260130 SLC25A6P12236 298 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 SLC16A13Q7RTY0 426 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 STX12Q86Y82 276 aa13.14□□□□□ -0.31
SDCBP-201ENST00000260130 A0A087WWC5 75 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 TRAV41A0A0B4J266 112 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 ADARB2-AS1A8MUL3 147 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 H3BQ15 152 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 RBFOX2O43251 390 aaKnown RBP eCLIP13.13□□□□□ -0.31
SDCBP-201ENST00000260130 SRP19P09132 144 aaKnown RBP13.13□□□□□ -0.31
SDCBP-201ENST00000260130 SAA1P0DJI8 122 aaPredicted RBP13.13□□□□□ -0.31
SDCBP-201ENST00000260130 EGR2P11161 476 aaPredicted RBP13.13□□□□□ -0.31
SDCBP-201ENST00000260130 OR2B8PP59922 312 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 RPL23AP62750 156 aaKnown RBP13.13□□□□□ -0.31
SDCBP-201ENST00000260130 ZNF506Q5JVG8 444 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 TMEM217Q8N7C4 229 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 ABHD5Q8WTS1 349 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 RFNGQ9Y644 331 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 VWFP04275 2813 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 A0A1B0GU03 582 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 SCAF4O95104 1147 aaKnown RBP13.13□□□□□ -0.31
SDCBP-201ENST00000260130 CNIH1O95406 144 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 HRASP01112 189 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 IGHG4P01861 327 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 F2RP25116 425 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 PPIFP30405 207 aaKnown RBP13.13□□□□□ -0.31
SDCBP-201ENST00000260130 CRIP2P52943 208 aaPredicted RBP13.13□□□□□ -0.31
SDCBP-201ENST00000260130 TAS2R30P59541 319 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 TMEM267Q0VDI3 215 aaPredicted RBP13.13□□□□□ -0.31
SDCBP-201ENST00000260130 FXYD3Q14802 87 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 HAGHQ16775 308 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 YPEL4Q96NS1 127 aa13.13□□□□□ -0.31
SDCBP-201ENST00000260130 TET2Q6N021 2002 aaPredicted RBP13.13□□□□□ -0.31
SDCBP-201ENST00000260130 A0A1W2PRX2 142 aa13.12□□□□□ -0.31
SDCBP-201ENST00000260130 TMEM50AO95807 157 aa13.12□□□□□ -0.31
SDCBP-201ENST00000260130 IFNA5P01569 189 aa13.12□□□□□ -0.31
SDCBP-201ENST00000260130 FABP1P07148 127 aa13.12□□□□□ -0.31
SDCBP-201ENST00000260130 NQO2P16083 231 aa13.12□□□□□ -0.31
SDCBP-201ENST00000260130 GNB1P62873 340 aa13.12□□□□□ -0.31
SDCBP-201ENST00000260130 MRGPRG-AS1Q2M3A8 158 aa13.12□□□□□ -0.31
SDCBP-201ENST00000260130 KHDC1LQ5JSQ8 128 aa13.12□□□□□ -0.31
SDCBP-201ENST00000260130 TREML4Q6UXN2 200 aa13.12□□□□□ -0.31
SDCBP-201ENST00000260130 VKORC1L1Q8N0U8 176 aa13.12□□□□□ -0.31
SDCBP-201ENST00000260130 ARPC1AQ92747 370 aa13.12□□□□□ -0.31
SDCBP-201ENST00000260130 RAB40CQ96S21 281 aa13.12□□□□□ -0.31
SDCBP-201ENST00000260130 FAM103A1Q9BTL3 118 aaKnown RBP13.12□□□□□ -0.31
SDCBP-201ENST00000260130 HPRT1P00492 218 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 ELANEP08246 267 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 OR8U8P0C7N1 319 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 TAGLN2P37802 199 aaKnown RBP13.11□□□□□ -0.31
SDCBP-201ENST00000260130 SSBP2P81877 361 aaPredicted RBP13.11□□□□□ -0.31
SDCBP-201ENST00000260130 FOXE3Q13461 319 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 ICAM4Q14773 271 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 PRSS8Q16651 343 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 KHDC3LQ587J8 217 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 ZNF429Q86V71 674 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 TVP23CQ96ET8 276 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 RHOVQ96L33 236 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 SERPINE2P07093 398 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 ECSCRQ19T08 205 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 RNF152Q8N8N0 203 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 VSTM2AQ8TAG5 236 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 NIPSNAP3BQ9BS92 247 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 NIT2Q9NQR4 276 aa13.11□□□□□ -0.31
SDCBP-201ENST00000260130 TRAV1-1A0A0B4J248 108 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 CXorf65A6NEN9 183 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 PAX9P55771 341 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 RUNX1Q01196 453 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 C19orf54Q5BKX5 351 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 SLC25A24Q6NUK1 477 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 TCTEX1D1Q8N7M0 179 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 FAM110DQ8TAY7 271 aaPredicted RBP13.1□□□□□ -0.31
SDCBP-201ENST00000260130 R3HDM4Q96D70 268 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 TMPRSS5Q9H3S3 457 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 NXPH3O95157 252 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 IGLV1-40P01703 118 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 PSMB8P28062 276 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 150.1 ms