RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 SP4Q02446 784 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 CD69Q07108 199 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 ANKRD37Q7Z713 158 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 SUMF1Q8NBK3 374 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 LRRC29Q8WV35 223 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 H1FXQ92522 213 aaKnown RBP6.31□□□□□ -1.4
GPNMB-201ENST00000258733 APOOQ9BUR5 198 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 TMEM147Q9BVK8 224 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 VSIRQ9H7M9 311 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 PCNX3Q9H6A9 2034 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 PTPRBP23467 1997 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 IGKV6-21A0A0C4DH24 114 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 LOC730098B7Z3J9 87 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 ELANEP08246 267 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 IGFBP6P24592 240 aaPredicted RBP6.31□□□□□ -1.4
GPNMB-201ENST00000258733 FOXA3P55318 350 aaPredicted RBP6.31□□□□□ -1.4
GPNMB-201ENST00000258733 ZNF816Q0VGE8 651 aaPredicted RBP6.31□□□□□ -1.4
GPNMB-201ENST00000258733 EFEMP1Q12805 493 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 FAM57BQ71RH2 274 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 ZCCHC24Q8N2G6 241 aaKnown RBP6.31□□□□□ -1.4
GPNMB-201ENST00000258733 MRPL53Q96EL3 112 aaKnown RBP6.31□□□□□ -1.4
GPNMB-201ENST00000258733 KCNIP2Q9NS61 270 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 SLC39A9Q9NUM3 307 aa6.31□□□□□ -1.4
GPNMB-201ENST00000258733 HLA-DQA1P01909 254 aa6.3□□□□□ -1.4
GPNMB-201ENST00000258733 TMEM258P61165 79 aa6.3□□□□□ -1.4
GPNMB-201ENST00000258733 KLF17Q5JT82 389 aaPredicted RBP6.3□□□□□ -1.4
GPNMB-201ENST00000258733 ZNF689Q96CS4 500 aaPredicted RBP6.3□□□□□ -1.4
GPNMB-201ENST00000258733 LILRA5A6NI73 299 aa6.3□□□□□ -1.4
GPNMB-201ENST00000258733 LGALS1P09382 135 aaKnown RBP6.3□□□□□ -1.4
GPNMB-201ENST00000258733 FAM120AOSQ5T036 256 aa6.3□□□□□ -1.4
GPNMB-201ENST00000258733 LYSMD4Q5XG99 296 aa6.3□□□□□ -1.4
GPNMB-201ENST00000258733 RPS19BP1Q86WX3 136 aaKnown RBP6.3□□□□□ -1.4
GPNMB-201ENST00000258733 ZMAT4Q9H898 229 aa6.3□□□□□ -1.4
GPNMB-201ENST00000258733 ZNF331Q9NQX6 463 aaPredicted RBP6.3□□□□□ -1.4
GPNMB-201ENST00000258733 NHP2Q9NX24 153 aaKnown RBP6.3□□□□□ -1.4
GPNMB-201ENST00000258733 RNF186Q9NXI6 227 aa6.3□□□□□ -1.4
GPNMB-201ENST00000258733 TMEM131Q92545 1883 aa6.3□□□□□ -1.4
GPNMB-201ENST00000258733 FANCMQ8IYD8 2048 aa6.3□□□□□ -1.4
GPNMB-201ENST00000258733 TRAV8-1A0A0A6YYK1 113 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 DPM2O94777 84 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 NDUFB2O95178 105 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 CD7P09564 240 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 MGST1P10620 155 aaKnown RBP6.29□□□□□ -1.4
GPNMB-201ENST00000258733 RPL34P49207 117 aaKnown RBP6.29□□□□□ -1.4
GPNMB-201ENST00000258733 NANOS3P60323 173 aaKnown RBP6.29□□□□□ -1.4
GPNMB-201ENST00000258733 TMEM187Q14656 261 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 MS4A13Q5J8X5 152 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 ZAR1Q86SH2 424 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 CEND1Q8N111 149 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 BCL6BQ8N143 479 aaPredicted RBP6.29□□□□□ -1.4
GPNMB-201ENST00000258733 ANKRD29Q8N6D5 301 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 ZNF441Q8N8Z8 693 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 C15orf53Q8NAA6 179 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 VKORC1Q9BQB6 163 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 ZNF286AQ9HBT8 521 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 LEPROTL1O95214 131 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 IL9P15248 144 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 FKBP2P26885 142 aaKnown RBP6.29□□□□□ -1.4
GPNMB-201ENST00000258733 LEPP41159 167 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 DYNLT3P51808 116 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 MRPL2Q5T653 305 aaKnown RBP6.29□□□□□ -1.4
GPNMB-201ENST00000258733 ZNF493Q6ZR52 646 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 CIARTQ8N365 385 aaPredicted RBP6.29□□□□□ -1.4
GPNMB-201ENST00000258733 LINC00482Q8N8I6 264 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 NUP35Q8NFH5 326 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 FAM19A4Q96LR4 140 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 KXD1Q9BQD3 176 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 KLK14Q9P0G3 267 aa6.29□□□□□ -1.4
GPNMB-201ENST00000258733 TRBV5-5A0A0J9YX44 114 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 CXCL13O43927 109 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 CRYGAP11844 174 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 SRSF9Q13242 221 aaKnown RBP eCLIP6.28□□□□□ -1.4
GPNMB-201ENST00000258733 PMAIP1Q13794 54 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 C4orf45Q96LM5 186 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 DSCR8Q96T75 97 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 MYO16Q9Y6X6 1858 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 ATG2BQ96BY7 2078 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 PHF3Q92576 2039 aaKnown RBP6.28□□□□□ -1.4
GPNMB-201ENST00000258733 TRAV8-2A0A0B4J237 113 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 PRR32B1ATL7 298 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 SPINT2O43291 252 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 FOXC1Q12948 553 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 TMEM252Q8N6L7 170 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 ARHGAP21Q5T5U3 1957 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 TRBV5-7A0A0A0MS05 114 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 C5orf49A4QMS7 147 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 H7C1H1 209 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 TRACP01848 142 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 PHLDA2Q53GA4 152 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 LINC01545Q5VT33 79 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 HIST2H2BCQ6DN03 193 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 HIST2H2BDQ6DRA6 164 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 LINC00173Q6ZV60 143 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 PRIMA1Q86XR5 153 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 MMD2Q8IY49 270 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 NUS1Q96E22 293 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 TMEM121BQ9BXQ6 578 aaPredicted RBP6.28□□□□□ -1.4
GPNMB-201ENST00000258733 C20orf141Q9NUB4 165 aa6.28□□□□□ -1.4
GPNMB-201ENST00000258733 POLR2LP62875 67 aaKnown RBP6.27□□□□□ -1.41
GPNMB-201ENST00000258733 PCSK4Q6UW60 755 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms