RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZNF418Q8TF45 676 aaPredicted RBP9.37□□□□□ -0.91
VPS4A-201ENST00000254950 METTL26Q96S19 204 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 A0A0G2JLM5 398 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 FCGR2BP31994 310 aaPredicted RBP9.37□□□□□ -0.91
VPS4A-201ENST00000254950 RPL29P47914 159 aaKnown RBP9.37□□□□□ -0.91
VPS4A-201ENST00000254950 CYB561D1Q8N8Q1 229 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 OR11H6Q8NGC7 330 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 FUT9Q9Y231 359 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 ASPMQ8IZT6 3477 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 IGHV3-35A0A0C4DH35 117 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 G3V3Q6 166 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 AP4M1O00189 453 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 ERVFC1-1P60608 527 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 RELQ04864 619 aaPredicted RBP9.36□□□□□ -0.91
VPS4A-201ENST00000254950 DEFB113Q30KQ7 82 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 BSXQ3C1V8 233 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 RUSC1-AS1Q66K80 236 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 TREML4Q6UXN2 200 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 NRGNQ92686 78 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 REG4Q9BYZ8 158 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 PRSS22Q9GZN4 317 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 PPP5D1E7EU14 171 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 PPP1R2P9O14990 202 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 GATA2P23769 480 aaPredicted RBP9.36□□□□□ -0.91
VPS4A-201ENST00000254950 PAX9P55771 341 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 C11orf71Q6IPW1 123 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 CLRN3Q8NCR9 226 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 RABAC1Q9UI14 185 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 DOPEY2Q9Y3R5 2298 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 ZNF462Q96JM2 2506 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 FGF16O43320 207 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 SNRPCP09234 159 aaKnown RBP9.36□□□□□ -0.91
VPS4A-201ENST00000254950 RNASE2P10153 161 aaKnown RBP9.36□□□□□ -0.91
VPS4A-201ENST00000254950 ZNF90Q03938 601 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 NECAP1Q8NC96 275 aa9.36□□□□□ -0.91
VPS4A-201ENST00000254950 MUC3AQ02505 3323 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 J3QLI3 93 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 PAX6P26367 422 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 GCHFRP30047 84 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 C8orf46Q8TAG6 207 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 SRSF8Q9BRL6 282 aaKnown RBP9.35□□□□□ -0.91
VPS4A-201ENST00000254950 OR51M1Q9H341 326 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 F11RQ9Y624 299 aaKnown RBP9.35□□□□□ -0.91
VPS4A-201ENST00000254950 CLDN34H7C241 214 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 GPR183P32249 361 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 AWAT1Q58HT5 328 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 A0A1W2PPI3 338 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 HELTA6NFD8 242 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 H3BQ15 152 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 DNASE2O00115 360 aaPredicted RBP9.35□□□□□ -0.91
VPS4A-201ENST00000254950 RPL7P18124 248 aaKnown RBP9.35□□□□□ -0.91
VPS4A-201ENST00000254950 RAB9AP51151 201 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 RHOGP84095 191 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 ARL16Q0P5N6 197 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 FAM106AQ4KMX7 169 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 ZNF562Q6V9R5 426 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 GGTLC1Q9BX51 225 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 LOC400499M0QZD8 3231 aa9.35□□□□□ -0.91
VPS4A-201ENST00000254950 ARFGEF3Q5TH69 2177 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 A0A1W2PS18 150 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 TCRBV4S1A1TA0A5B7 111 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 SRRM4A7MD48 611 aaKnown RBP9.34□□□□□ -0.91
VPS4A-201ENST00000254950 IGHV3-23P01764 117 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 AREGP15514 252 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 LINC00305Q7Z4B0 112 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 TPPP3Q9BW30 176 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 LINC00574Q9H8X3 128 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 LRRK2Q5S007 2527 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 CNTFRP26992 372 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 VDAC2P45880 294 aaPredicted RBP9.34□□□□□ -0.91
VPS4A-201ENST00000254950 DLX6P56179 175 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 NDUFA4L2Q9NRX3 87 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 TRAV41A0A0B4J266 112 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 XKRY2A2RUG3 117 aa9.34□□□□□ -0.91
VPS4A-201ENST00000254950 IGKV3-7A0A075B6H7 116 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 A0A1W2PPQ1 181 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 RARRES2Q99969 163 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 ZNF331Q9NQX6 463 aaPredicted RBP9.33□□□□□ -0.92
VPS4A-201ENST00000254950 C7orf77A4D0Y5 90 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 HOXB4P17483 251 aaPredicted RBP9.33□□□□□ -0.92
VPS4A-201ENST00000254950 NPPCP23582 126 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 GAMTQ14353 236 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 ZNF506Q5JVG8 444 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 PVRIGQ6DKI7 326 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 TMPRSS5Q9H3S3 457 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 B4DEV8 164 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 IGLV1-47P01700 117 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 TCF23Q7RTU1 214 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 DDB2Q92466 427 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 LINC00527Q9UJ94 153 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 A0A087X0M5 115 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 LOC102723971A0A1B0GUV8 181 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 A0A1B0GX30 115 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 PGPA6NDG6 321 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 NDUFB4O95168 129 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 CLEC19AQ6UXS0 136 aa9.33□□□□□ -0.92
VPS4A-201ENST00000254950 FNDC10F2Z333 226 aa9.32□□□□□ -0.92
VPS4A-201ENST00000254950 IGLV2-14P01704 120 aa9.32□□□□□ -0.92
VPS4A-201ENST00000254950 ZFP36P26651 326 aaKnown RBP9.32□□□□□ -0.92
VPS4A-201ENST00000254950 ZNF841Q6ZN19 808 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms