RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 KIR2DL4Q99706 377 aa10.68□□□□□ -0.7
USP40-201ENST00000251722 DEPPQ9NTK1 212 aa10.68□□□□□ -0.7
USP40-201ENST00000251722 MMP23AO75900 390 aa10.68□□□□□ -0.7
USP40-201ENST00000251722 CIRBPQ14011 172 aaKnown RBP10.68□□□□□ -0.7
USP40-201ENST00000251722 KNL1Q8NG31 2342 aa10.68□□□□□ -0.7
USP40-201ENST00000251722 IGFBP3P17936 291 aaPredicted RBP10.68□□□□□ -0.7
USP40-201ENST00000251722 NPIPB3Q92617 1050 aa10.68□□□□□ -0.7
USP40-201ENST00000251722 A0A0G2JK05 382 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 NPFFO15130 113 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 TMEM50AO95807 157 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 ADAMTSL5Q6ZMM2 481 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 DMRTC2Q8IXT2 367 aaPredicted RBP10.67□□□□□ -0.7
USP40-201ENST00000251722 TMEM126AQ9H061 195 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 TRAV14DV4A0A0A6YYC5 116 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 CXCL1P09341 107 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 TMEM101Q96IK0 257 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 AURKAIP1Q9NWT8 199 aaPredicted RBP10.67□□□□□ -0.7
USP40-201ENST00000251722 POLR3KQ9Y2Y1 108 aaPredicted RBP10.67□□□□□ -0.7
USP40-201ENST00000251722 FCN3O75636 299 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 LINC01551Q86U37 167 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 FAM89BQ8N5H3 189 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 ZNF414Q96IQ9 312 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 MTCL1Q9Y4B5 1905 aaKnown RBP10.67□□□□□ -0.7
USP40-201ENST00000251722 TRBV6-7A0A0A0MS04 114 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 OR9G9P0C7N8 305 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 IFITM1P13164 125 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 OR13A1Q8NGR1 328 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 C1orf43Q9BWL3 253 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 RPRMQ9NS64 109 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 CRYBA2P53672 197 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 WDR82Q6UXN9 313 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 BIVMQ86UB2 503 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 FBXL15Q9H469 300 aa10.67□□□□□ -0.7
USP40-201ENST00000251722 UNC13CQ8NB66 2214 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 K7ENP7 123 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 C1QCP02747 245 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 ASIPP42127 132 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 CD69Q07108 199 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 SSC4DQ8WTU2 575 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 UPK2O00526 184 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 CDKN1AP38936 164 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 PEAR1Q5VY43 1037 aaPredicted RBP10.66□□□□□ -0.7
USP40-201ENST00000251722 A0A1B0GTI1 187 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 RNASE8Q8TDE3 154 aaKnown RBP10.66□□□□□ -0.7
USP40-201ENST00000251722 FMC1Q96HJ9 113 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 ZNF646O15015 1829 aaPredicted RBP10.66□□□□□ -0.7
USP40-201ENST00000251722 CRYBA4P53673 196 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 RUNX1Q01196 453 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 LY6DQ14210 128 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 ZNF497Q6ZNH5 498 aa10.66□□□□□ -0.7
USP40-201ENST00000251722 CNTRLQ7Z7A1 2325 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 C8orf46Q8TAG6 207 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 SLC25A28Q96A46 364 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 TMSB15BA0A087X1C1 80 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 PROB1E7EW31 1015 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 CEACAM4O75871 244 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 NBL1P41271 181 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 MPV17L2Q567V2 206 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 BMPERQ8N8U9 685 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 MRPL20Q9BYC9 149 aaKnown RBP10.65□□□□□ -0.7
USP40-201ENST00000251722 ZSWIM8A7E2V4 1837 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 OR11H12B2RN74 326 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 B5MCH6 92 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 GCHFRP30047 84 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 RPL39P5Q59GN2 51 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 OR11H1Q8NG94 326 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 OR11H2Q8NH07 326 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 KLF12Q9Y4X4 402 aa10.65□□□□□ -0.7
USP40-201ENST00000251722 IGFL3Q6UXB1 125 aa10.65□□□□□ -0.71
USP40-201ENST00000251722 LINC00305Q7Z4B0 112 aa10.65□□□□□ -0.71
USP40-201ENST00000251722 NHP2Q9NX24 153 aaKnown RBP10.65□□□□□ -0.71
USP40-201ENST00000251722 ADMP35318 185 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 SLC25A2Q9BXI2 301 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 PDCD11Q14690 1871 aaKnown RBP10.64□□□□□ -0.71
USP40-201ENST00000251722 F8W1H4 67 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 IGHV1-46P01743 117 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 C2orf68Q2NKX9 166 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 KIAA1644Q3SXP7 199 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 LEAP2Q969E1 77 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 IGHV3OR16-12A0A075B7B8 117 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 ARL14EPLP0DKL9 152 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 TMEM155Q4W5P6 130 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 GGNQ86UU5 652 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 DTX2Q86UW9 622 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 IL6RP08887 468 aaPredicted RBP10.64□□□□□ -0.71
USP40-201ENST00000251722 CRYGSP22914 178 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 BTCP35070 178 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 SLC25A15Q9Y619 301 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 CACNA1CQ13936 2221 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 H3BRM9 83 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 C1QTNF9P0C862 333 aa10.64□□□□□ -0.71
USP40-201ENST00000251722 CIARTQ8N365 385 aaPredicted RBP10.64□□□□□ -0.71
USP40-201ENST00000251722 IGHV3OR16-10A0A075B7F0 116 aa10.63□□□□□ -0.71
USP40-201ENST00000251722 IGHV2-70DA0A0C4DH43 119 aa10.63□□□□□ -0.71
USP40-201ENST00000251722 ZNF672Q499Z4 452 aaPredicted RBP10.63□□□□□ -0.71
USP40-201ENST00000251722 ACTL10Q5JWF8 245 aa10.63□□□□□ -0.71
USP40-201ENST00000251722 TCRBV4S1A1TA0A5B7 111 aa10.63□□□□□ -0.71
USP40-201ENST00000251722 SRRM5B3KS81 715 aa10.63□□□□□ -0.71
USP40-201ENST00000251722 PLAURQ03405 335 aa10.63□□□□□ -0.71
USP40-201ENST00000251722 GTSCR1Q86UQ5 136 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms