RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 OR9G9P0C7N8 305 aa12.09□□□□□ -0.47
PTPRA-201ENST00000216877 TMEM42Q69YG0 159 aa12.09□□□□□ -0.47
PTPRA-201ENST00000216877 NABP2Q9BQ15 211 aa12.09□□□□□ -0.47
PTPRA-201ENST00000216877 FZR1Q9UM11 496 aa12.09□□□□□ -0.47
PTPRA-201ENST00000216877 TNCP24821 2201 aa12.09□□□□□ -0.47
PTPRA-201ENST00000216877 MPDU1O75352 247 aa12.09□□□□□ -0.47
PTPRA-201ENST00000216877 SRYQ05066 204 aa12.09□□□□□ -0.47
PTPRA-201ENST00000216877 EDDM3AQ14507 147 aa12.09□□□□□ -0.47
PTPRA-201ENST00000216877 SFTA2Q6UW10 78 aa12.09□□□□□ -0.47
PTPRA-201ENST00000216877 C2orf91Q6ZV80 131 aa12.09□□□□□ -0.47
PTPRA-201ENST00000216877 A0A1B0GWB2 263 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 CXCL13O43927 109 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 AMMECR1Q9Y4X0 333 aaPredicted RBP12.08□□□□□ -0.48
PTPRA-201ENST00000216877 PI4KAP42356 2102 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 TRAV5A0A0B4J249 113 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 GGTLC3B5MD39 225 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 APOHP02749 345 aaPredicted RBP12.08□□□□□ -0.48
PTPRA-201ENST00000216877 SMIM17P0DL12 118 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 GDF1P27539 372 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 HBBP68871 147 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 C10orf128Q5T292 105 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 MOB3BQ86TA1 216 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 LRRC29Q8WV35 223 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 TMEM140Q9NV12 185 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 H3BMG7 143 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 H3BTX0 84 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 SPINK8P0C7L1 97 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 GATA3P23771 443 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 GNG5P63218 68 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 C3AR1Q16581 482 aa12.08□□□□□ -0.48
PTPRA-201ENST00000216877 H1FXQ92522 213 aaKnown RBP12.08□□□□□ -0.48
PTPRA-201ENST00000216877 ZFAND5O76080 213 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 OR2H2O95918 312 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 IGHV3-48P01763 117 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 IGHV4-34P06331 123 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 SCGB1A1P11684 91 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 PCBD1P61457 104 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 OR1C1Q15619 314 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 TRIP6Q15654 476 aaKnown RBP12.07□□□□□ -0.48
PTPRA-201ENST00000216877 LCNL1Q6ZST4 164 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 GNG12Q9UBI6 72 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FREM1Q5H8C1 2179 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 VPS13AQ96RL7 3174 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 A0A0J9YW62 118 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 B5MCH6 92 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 SLC25A17O43808 307 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 SCGB2A1O75556 95 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 HOXA4Q00056 320 aaPredicted RBP12.07□□□□□ -0.48
PTPRA-201ENST00000216877 SHISA2Q6UWI4 295 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 Q6ZS49 121 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 AP5S1Q9NUS5 200 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A10PA6NDY2 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A18PA6NE21 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A16PA6NEW6 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A20PA6NIJ5 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A8PA6NJQ4 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A7PA6NKC0 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A22PA8MWA6 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A12PA8MX19 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A5PA8MXJ8 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A23PA8MXZ1 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 SCRG1O75711 98 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A15PP0C7V4 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A13PP0C7W8 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A14PP0C7W9 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 FAM90A24PP0C7X0 464 aa12.07□□□□□ -0.48
PTPRA-201ENST00000216877 MAFAQ8NHW3 353 aaPredicted RBP12.07□□□□□ -0.48
PTPRA-201ENST00000216877 A0A1B0GX78 115 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 NCR2O95944 276 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 AREGP15514 252 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 CSN1S1P47710 185 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 BCL6BQ8N143 479 aaPredicted RBP12.06□□□□□ -0.48
PTPRA-201ENST00000216877 ZNF645Q8N7E2 425 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 FAM169BQ8N8A8 192 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 FGF23Q9GZV9 251 aaPredicted RBP12.06□□□□□ -0.48
PTPRA-201ENST00000216877 TRAV3A0A0B4J244 114 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 CACNG7P62955 275 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 PCP2Q8IVA1 136 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 ZNF441Q8N8Z8 693 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 TMEM54Q969K7 222 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 TAAR6Q96RI8 345 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 C1RLQ9NZP8 487 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 LY96Q9Y6Y9 160 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 INSL3P51460 131 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 GRAMD2BQ96HH9 432 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 URB1-AS1Q96HZ7 61 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 TTTY13Q9BZ97 58 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 SMPXQ9UHP9 88 aa12.06□□□□□ -0.48
PTPRA-201ENST00000216877 NBEAQ8NFP9 2946 aa12.05□□□□□ -0.48
PTPRA-201ENST00000216877 FOXL2NBQ6ZUU3 175 aa12.05□□□□□ -0.48
PTPRA-201ENST00000216877 MOB1BQ7L9L4 216 aa12.05□□□□□ -0.48
PTPRA-201ENST00000216877 C11orf52Q96A22 123 aa12.05□□□□□ -0.48
PTPRA-201ENST00000216877 SPAG8Q99932 426 aaPredicted RBP12.05□□□□□ -0.48
PTPRA-201ENST00000216877 LRP4O75096 1905 aa12.05□□□□□ -0.48
PTPRA-201ENST00000216877 LINC00473A8K010 186 aa12.05□□□□□ -0.48
PTPRA-201ENST00000216877 PYYP10082 97 aa12.05□□□□□ -0.48
PTPRA-201ENST00000216877 HERV-K104P63124 156 aa12.05□□□□□ -0.48
PTPRA-201ENST00000216877 Q8N7P7 452 aa12.05□□□□□ -0.48
PTPRA-201ENST00000216877 SLC25A5P05141 298 aaKnown RBP12.04□□□□□ -0.48
PTPRA-201ENST00000216877 GPR12P47775 334 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms