RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 GFI1Q99684 422 aa10.26□□□□□ -0.77
CLN3-249ENST00000636685 DCSTAMPQ9H295 470 aa10.26□□□□□ -0.77
CLN3-249ENST00000636685 MDFICQ9P1T7 246 aa10.26□□□□□ -0.77
CLN3-249ENST00000636685 XCL2Q9UBD3 114 aa10.26□□□□□ -0.77
CLN3-249ENST00000636685 OR2W1Q9Y3N9 320 aa10.26□□□□□ -0.77
CLN3-249ENST00000636685 F11RQ9Y624 299 aaKnown RBP10.26□□□□□ -0.77
CLN3-249ENST00000636685 A0A075B6Q4 140 aa10.25□□□□□ -0.77
CLN3-249ENST00000636685 K7EQG2 157 aa10.25□□□□□ -0.77
CLN3-249ENST00000636685 CLDN12P56749 244 aa10.25□□□□□ -0.77
CLN3-249ENST00000636685 NCS1P62166 190 aa10.25□□□□□ -0.77
CLN3-249ENST00000636685 SPHARQ15513 63 aa10.25□□□□□ -0.77
CLN3-249ENST00000636685 SSX1Q16384 188 aa10.25□□□□□ -0.77
CLN3-249ENST00000636685 NIPSNAP3BQ9BS92 247 aa10.25□□□□□ -0.77
CLN3-249ENST00000636685 CCDC59Q9P031 241 aaKnown RBP10.25□□□□□ -0.77
CLN3-249ENST00000636685 DKK2Q9UBU2 259 aa10.25□□□□□ -0.77
CLN3-249ENST00000636685 A0A1B0GVG6 124 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 SLC17A2O00624 439 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 MYL12BO14950 172 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 SLC22A5O76082 557 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 HSMCR30P0CW71 290 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 TRAPPC2P0DI81 140 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 TRAPPC2BP0DI82 140 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 GNB3P16520 340 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 PSMA1P25786 263 aaKnown RBP10.24□□□□□ -0.77
CLN3-249ENST00000636685 MLLT11Q13015 90 aaPredicted RBP10.24□□□□□ -0.77
CLN3-249ENST00000636685 FAM222AQ5U5X8 452 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 Q6ZNX1 250 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 STXBP6Q8NFX7 210 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 MCFD2Q8NI22 146 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 RAB3CQ96E17 227 aa10.24□□□□□ -0.77
CLN3-249ENST00000636685 NXF2Q9GZY0 626 aaKnown RBP10.24□□□□□ -0.77
CLN3-249ENST00000636685 LSM2Q9Y333 95 aaKnown RBP10.24□□□□□ -0.77
CLN3-249ENST00000636685 TEX50A0A1B0GTY4 177 aa10.23□□□□□ -0.77
CLN3-249ENST00000636685 RAB11BQ15907 218 aa10.23□□□□□ -0.77
CLN3-249ENST00000636685 HSD17B12Q53GQ0 312 aa10.23□□□□□ -0.77
CLN3-249ENST00000636685 TOMM20LQ6UXN7 152 aa10.23□□□□□ -0.77
CLN3-249ENST00000636685 GRAMD2BQ96HH9 432 aa10.23□□□□□ -0.77
CLN3-249ENST00000636685 GINS3Q9BRX5 216 aa10.23□□□□□ -0.77
CLN3-249ENST00000636685 HINT2Q9BX68 163 aa10.23□□□□□ -0.77
CLN3-249ENST00000636685 SLIRPQ9GZT3 109 aaKnown RBP10.23□□□□□ -0.77
CLN3-249ENST00000636685 SSR3Q9UNL2 185 aa10.23□□□□□ -0.77
CLN3-249ENST00000636685 MFNGO00587 321 aa10.22□□□□□ -0.77
CLN3-249ENST00000636685 TNFSF12O43508 249 aa10.22□□□□□ -0.77
CLN3-249ENST00000636685 IGHV3-48P01763 117 aa10.22□□□□□ -0.77
CLN3-249ENST00000636685 S100A5P33763 92 aa10.22□□□□□ -0.77
CLN3-249ENST00000636685 FUSP35637 526 aaKnown RBP eCLIP10.22□□□□□ -0.77
CLN3-249ENST00000636685 PPP5CP53041 499 aa10.22□□□□□ -0.77
CLN3-249ENST00000636685 C2orf76Q3KRA6 126 aa10.22□□□□□ -0.77
CLN3-249ENST00000636685 Q6ZS49 121 aa10.22□□□□□ -0.77
CLN3-249ENST00000636685 SPAG16Q8N0X2 631 aa10.22□□□□□ -0.77
CLN3-249ENST00000636685 RAB40CQ96S21 281 aa10.22□□□□□ -0.77
CLN3-249ENST00000636685 NEU1Q99519 415 aa10.22□□□□□ -0.77
CLN3-249ENST00000636685 AIFM2Q9BRQ8 373 aa10.22□□□□□ -0.77
CLN3-249ENST00000636685 TMEM140Q9NV12 185 aa10.22□□□□□ -0.77
CLN3-249ENST00000636685 LOC100506127A0A0U1RQW1 187 aa10.21□□□□□ -0.77
CLN3-249ENST00000636685 TMEM189A5PLL7 270 aa10.21□□□□□ -0.77
CLN3-249ENST00000636685 TALDO1P37837 337 aa10.21□□□□□ -0.77
CLN3-249ENST00000636685 MFAP4P55083 255 aa10.21□□□□□ -0.77
CLN3-249ENST00000636685 WNT4P56705 351 aa10.21□□□□□ -0.77
CLN3-249ENST00000636685 RGS21Q2M5E4 152 aa10.21□□□□□ -0.77
CLN3-249ENST00000636685 THOC7Q6I9Y2 204 aaKnown RBP10.21□□□□□ -0.77
CLN3-249ENST00000636685 ZNF705AQ6ZN79 300 aaPredicted RBP10.21□□□□□ -0.77
CLN3-249ENST00000636685 HSD17B13Q7Z5P4 300 aaPredicted RBP10.21□□□□□ -0.77
CLN3-249ENST00000636685 C15orf53Q8NAA6 179 aa10.21□□□□□ -0.77
CLN3-249ENST00000636685 SLC25A46Q96AG3 418 aa10.21□□□□□ -0.77
CLN3-249ENST00000636685 FAM3DQ96BQ1 224 aa10.21□□□□□ -0.77
CLN3-249ENST00000636685 C1QTNF4Q9BXJ3 329 aa10.21□□□□□ -0.77
CLN3-249ENST00000636685 ELF5Q9UKW6 265 aaPredicted RBP10.21□□□□□ -0.77
CLN3-249ENST00000636685 AK6Q9Y3D8 172 aaKnown RBP10.21□□□□□ -0.77
CLN3-249ENST00000636685 IGHV3OR16-12A0A075B7B8 117 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 TMEM272A0A1B0GTI8 110 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 ZNF705FA8MVS1 300 aaPredicted RBP10.2□□□□□ -0.78
CLN3-249ENST00000636685 PFDN1O60925 122 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 SMR3BP02814 79 aaPredicted RBP10.2□□□□□ -0.78
CLN3-249ENST00000636685 ZNF705DP0CH99 300 aaPredicted RBP10.2□□□□□ -0.78
CLN3-249ENST00000636685 ZNF705BP0CI00 300 aaPredicted RBP10.2□□□□□ -0.78
CLN3-249ENST00000636685 TAS2R31P59538 309 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 DLK1P80370 383 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 POU2AF1Q16633 256 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 OR1L8Q8NGR8 309 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 OR10R2Q8NGX6 335 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 CENPOQ9BU64 300 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 KRTAP1-5Q9BYS1 174 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 NDUFA4L2Q9NRX3 87 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 NDUFB11Q9NX14 153 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 RFNGQ9Y644 331 aa10.2□□□□□ -0.78
CLN3-249ENST00000636685 TEX48A0A1B0GUV7 120 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 I3L2K1 104 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 UCHL1P09936 223 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 NQO2P16083 231 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 HIST1H1DP16402 221 aaKnown RBP10.19□□□□□ -0.78
CLN3-249ENST00000636685 BTF3P20290 206 aaKnown RBP10.19□□□□□ -0.78
CLN3-249ENST00000636685 FGF9P31371 208 aaPredicted RBP10.19□□□□□ -0.78
CLN3-249ENST00000636685 RORCP51449 518 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 OXA1LQ15070 435 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 PSMG4Q5JS54 123 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 MS4A15Q8N5U1 240 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 DMBX1Q8NFW5 382 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 DCANP1Q8TF63 244 aa10.19□□□□□ -0.78
CLN3-249ENST00000636685 UFD1Q92890 307 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms