RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 STX3Q13277 289 aa-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 HLA-DRB5Q30154 266 aa-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 CLECL1Q8IZS7 167 aa-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 ATOH7Q8N100 152 aa-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 PFN4Q8NHR9 129 aa-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 COMMD5Q9GZQ3 224 aa-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 AK3Q9UIJ7 227 aa-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 USP9YO00507 2555 aaPredicted RBP-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 HECTD1Q9ULT8 2610 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 TRBV6-4A0A1B0GX49 114 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 SMIM9A6NGZ8 99 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 SULT1B1O43704 296 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 BRI3O95415 125 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 FAM228BP0C875 321 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 LCN1P31025 176 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 DNAL1Q4LDG9 190 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 C1orf194Q5T5A4 169 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 FAM45BPQ6NSW5 357 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 OR4E2Q8NGC2 313 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 RASSF5Q8WWW0 418 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 RBP7Q96R05 134 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 EURLQ9NYK6 297 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 KIAA1549Q9HCM3 1950 aa-0.98□□□□□ -2.57
SCN1A-211ENST00000635893 IGHV1-69-2A0A0G2JMI3 117 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 C5orf67F2Z3F1 127 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 FAAHO00519 579 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 FADS2O95864 444 aaKnown RBP-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 CD3DP04234 171 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 PRM2P04554 102 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 BAALC-AS2P0C853 105 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 SYT1P21579 422 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 CCL1P22362 96 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 FAM74A1Q5RGS3 127 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 BPIFA4PQ86YQ2 179 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 ATP6V1C2Q8NEY4 427 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 EFCAB1Q9HAE3 211 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 PXMP4Q9Y6I8 212 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 FLNBO75369 2602 aaKnown RBP-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 MAP3K19Q56UN5 1328 aa-0.99□□□□□ -2.57
SCN1A-211ENST00000635893 TRAV3A0A0B4J244 114 aa-1□□□□□ -2.57
SCN1A-211ENST00000635893 ACOX3O15254 700 aa-1□□□□□ -2.57
SCN1A-211ENST00000635893 CCL16O15467 120 aa-1□□□□□ -2.57
SCN1A-211ENST00000635893 ATP6V1G2O95670 118 aa-1□□□□□ -2.57
SCN1A-211ENST00000635893 NKX2-5P52952 324 aaPredicted RBP-1□□□□□ -2.57
SCN1A-211ENST00000635893 Q5BKY6 102 aa-1□□□□□ -2.57
SCN1A-211ENST00000635893 DPPA3Q6W0C5 159 aa-1□□□□□ -2.57
SCN1A-211ENST00000635893 EEF1AKMT1Q8WVE0 214 aa-1□□□□□ -2.57
SCN1A-211ENST00000635893 CYTH2Q99418 400 aa-1□□□□□ -2.57
SCN1A-211ENST00000635893 GINS4Q9BRT9 223 aa-1□□□□□ -2.57
SCN1A-211ENST00000635893 MS4A6AQ9H2W1 248 aa-1□□□□□ -2.57
SCN1A-211ENST00000635893 LRPPRCP42704 1394 aaKnown RBP-1□□□□□ -2.57
SCN1A-211ENST00000635893 KIF15Q9NS87 1388 aa-1□□□□□ -2.57
SCN1A-211ENST00000635893 RIMS2Q9UQ26 1411 aa-1□□□□□ -2.57
SCN1A-211ENST00000635893 PHRF1Q9P1Y6 1649 aaKnown RBP-1□□□□□ -2.57
SCN1A-211ENST00000635893 ABCA12Q86UK0 2595 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 TEP1Q99973 2627 aaKnown RBP-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 TGP01266 2768 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 LAMA2P24043 3122 aaKnown RBP-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 NBPF19A0A087WUL8 3843 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 C10orf142B7Z368 130 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 CCRL2O00421 344 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 STX10O60499 249 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 CLDN12P56749 244 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 RHEBQ15382 184 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 ZNHIT3Q15649 155 aaPredicted RBP-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 C10orf99Q6UWK7 81 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 C5orf46Q6UWT4 87 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 OR5A1Q8NGJ0 315 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 C4orf3Q8WVX3 66 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 ITFG2Q969R8 447 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 DERL2Q9GZP9 239 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 TP53TG1Q9Y2A0 90 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 MXRA5Q9NR99 2828 aa-1.01□□□□□ -2.57
SCN1A-211ENST00000635893 ITPR3Q14573 2671 aa-1.02□□□□□ -2.57
SCN1A-211ENST00000635893 OR4C45A6NMZ5 311 aa-1.02□□□□□ -2.57
SCN1A-211ENST00000635893 NEMFO60524 1076 aa-1.02□□□□□ -2.57
SCN1A-211ENST00000635893 CXCR4P61073 352 aa-1.02□□□□□ -2.57
SCN1A-211ENST00000635893 PTPN13Q12923 2485 aa-1.02□□□□□ -2.57
SCN1A-211ENST00000635893 AADACL3Q5VUY0 350 aa-1.02□□□□□ -2.57
SCN1A-211ENST00000635893 HIST2H3AQ71DI3 136 aa-1.02□□□□□ -2.57
SCN1A-211ENST00000635893 CLVS1Q8IUQ0 354 aaPredicted RBP-1.02□□□□□ -2.57
SCN1A-211ENST00000635893 CCDC124Q96CT7 223 aaKnown RBP-1.02□□□□□ -2.57
SCN1A-211ENST00000635893 SCGB3A1Q96QR1 104 aa-1.02□□□□□ -2.57
SCN1A-211ENST00000635893 DERL1Q9BUN8 251 aa-1.02□□□□□ -2.57
SCN1A-211ENST00000635893 TNFSF18Q9UNG2 199 aa-1.02□□□□□ -2.57
SCN1A-211ENST00000635893 IGHV1-58A0A0C4DH39 117 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 A0A0D9SG52 128 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 NUPR1O60356 82 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 KRT75O95678 551 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 KCNE1P15382 129 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 MAP3K7CLP57077 242 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 CCL20P78556 96 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 FABP9Q0Z7S8 132 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 SYCP1Q15431 976 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 KHDC3LQ587J8 217 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 FAM78BQ5VT40 261 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 OR10J5Q8NHC4 309 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 HDHD2Q9H0R4 259 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 U3KQA8 63 aa-1.03□□□□□ -2.57
SCN1A-211ENST00000635893 MAP1BP46821 2468 aaKnown RBP-1.03□□□□□ -2.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms