RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 FBXL15Q9H469 300 aa17.67■□□□□ 0.42
PNKP-220ENST00000627232 FNDC4Q9H6D8 234 aaPredicted RBP17.67■□□□□ 0.42
PNKP-220ENST00000627232 MINOS1-NBL1R4GNA1 71 aa17.67■□□□□ 0.42
PNKP-220ENST00000627232 CXorf65A6NEN9 183 aa17.66■□□□□ 0.42
PNKP-220ENST00000627232 C11orf94C9JXX5 98 aa17.66■□□□□ 0.42
PNKP-220ENST00000627232 PDE6DO43924 150 aa17.66■□□□□ 0.42
PNKP-220ENST00000627232 THAP8Q8NA92 274 aa17.66■□□□□ 0.42
PNKP-220ENST00000627232 NPBQ8NG41 125 aa17.66■□□□□ 0.42
PNKP-220ENST00000627232 OR2T6Q8NHC8 308 aa17.66■□□□□ 0.42
PNKP-220ENST00000627232 SMIM7Q9BQ49 75 aa17.66■□□□□ 0.42
PNKP-220ENST00000627232 SEPSECSQ9HD40 501 aaKnown RBP17.66■□□□□ 0.42
PNKP-220ENST00000627232 FUT9Q9Y231 359 aa17.66■□□□□ 0.42
PNKP-220ENST00000627232 ARHGAP32A7KAX9 2087 aa17.66■□□□□ 0.42
PNKP-220ENST00000627232 IGHV2-70DA0A0C4DH43 119 aa17.65■□□□□ 0.42
PNKP-220ENST00000627232 F6UZH7 168 aa17.65■□□□□ 0.42
PNKP-220ENST00000627232 CORTO00230 105 aa17.65■□□□□ 0.42
PNKP-220ENST00000627232 TSPAN9O75954 239 aa17.65■□□□□ 0.42
PNKP-220ENST00000627232 CRYGCP07315 174 aa17.65■□□□□ 0.42
PNKP-220ENST00000627232 HOXB4P17483 251 aaPredicted RBP17.65■□□□□ 0.42
PNKP-220ENST00000627232 GCHFRP30047 84 aa17.65■□□□□ 0.42
PNKP-220ENST00000627232 TMEM241Q24JQ0 296 aa17.65■□□□□ 0.42
PNKP-220ENST00000627232 CCDC144NLQ6NUI1 221 aa17.65■□□□□ 0.42
PNKP-220ENST00000627232 OR1P1Q8NH06 330 aa17.65■□□□□ 0.42
PNKP-220ENST00000627232 ACY3Q96HD9 319 aa17.65■□□□□ 0.42
PNKP-220ENST00000627232 RNF2Q99496 336 aa17.65■□□□□ 0.42
PNKP-220ENST00000627232 MLXQ9UH92 298 aa17.65■□□□□ 0.42
PNKP-220ENST00000627232 CLN5O75503 358 aa17.64■□□□□ 0.41
PNKP-220ENST00000627232 MOSP00540 346 aa17.64■□□□□ 0.41
PNKP-220ENST00000627232 CRYBA1P05813 215 aa17.64■□□□□ 0.41
PNKP-220ENST00000627232 OR5G3P0C626 314 aa17.64■□□□□ 0.41
PNKP-220ENST00000627232 PDLIM4P50479 330 aa17.64■□□□□ 0.41
PNKP-220ENST00000627232 LMO4P61968 165 aa17.64■□□□□ 0.41
PNKP-220ENST00000627232 LHFPL4Q7Z7J7 247 aa17.64■□□□□ 0.41
PNKP-220ENST00000627232 ISOC2Q96AB3 205 aa17.64■□□□□ 0.41
PNKP-220ENST00000627232 YPEL4Q96NS1 127 aa17.64■□□□□ 0.41
PNKP-220ENST00000627232 PARLQ9H300 379 aa17.64■□□□□ 0.41
PNKP-220ENST00000627232 TMEM242Q9NWH2 141 aa17.64■□□□□ 0.41
PNKP-220ENST00000627232 HILPDAQ9Y5L2 63 aa17.64■□□□□ 0.41
PNKP-220ENST00000627232 HRNRQ86YZ3 2850 aaPredicted RBP17.63■□□□□ 0.41
PNKP-220ENST00000627232 TEX22C9J3V5 150 aa17.63■□□□□ 0.41
PNKP-220ENST00000627232 NBR2O15453 112 aa17.63■□□□□ 0.41
PNKP-220ENST00000627232 NDUFA3O95167 84 aa17.63■□□□□ 0.41
PNKP-220ENST00000627232 FAM78BQ5VT40 261 aa17.63■□□□□ 0.41
PNKP-220ENST00000627232 SPATA31B1PQ5VZV4 182 aa17.63■□□□□ 0.41
PNKP-220ENST00000627232 SRSF12Q8WXF0 261 aaKnown RBP17.63■□□□□ 0.41
PNKP-220ENST00000627232 MRPL32Q9BYC8 188 aaKnown RBP17.63■□□□□ 0.41
PNKP-220ENST00000627232 BPESC1Q9GZL8 116 aa17.63■□□□□ 0.41
PNKP-220ENST00000627232 TECRQ9NZ01 308 aaKnown RBP17.63■□□□□ 0.41
PNKP-220ENST00000627232 PRELID1Q9Y255 219 aa17.63■□□□□ 0.41
PNKP-220ENST00000627232 ARL2-SNX15V9GYD0 113 aa17.63■□□□□ 0.41
PNKP-220ENST00000627232 TCRBV4S1A1TA0A5B7 111 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 REG1AP05451 166 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 AREGP15514 252 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 SELENOTP62341 195 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 GNB1P62873 340 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 PLGLAQ15195 96 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 MMDQ15546 238 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 RPUSD4Q96CM3 377 aaKnown RBP17.62■□□□□ 0.41
PNKP-220ENST00000627232 F11RQ9Y624 299 aaKnown RBP17.62■□□□□ 0.41
PNKP-220ENST00000627232 IGHV4-39P01824 125 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 UBE2G2P60604 165 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 LCN2P80188 198 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 SSBP2P81877 361 aaPredicted RBP17.62■□□□□ 0.41
PNKP-220ENST00000627232 CST9LP1Q5W188 147 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 MIR17HGQ75NE6 70 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 OR2T10Q8NGZ9 312 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 NPIPB3Q92617 1050 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 EAF1Q96JC9 268 aaPredicted RBP17.62■□□□□ 0.41
PNKP-220ENST00000627232 CTDSP1Q9GZU7 261 aa17.62■□□□□ 0.41
PNKP-220ENST00000627232 TBL2Q9Y4P3 447 aaKnown RBP17.62■□□□□ 0.41
PNKP-220ENST00000627232 KLF2Q9Y5W3 355 aaPredicted RBP17.62■□□□□ 0.41
PNKP-220ENST00000627232 FOXH1O75593 365 aa17.61■□□□□ 0.41
PNKP-220ENST00000627232 ATP5G3P48201 142 aa17.61■□□□□ 0.41
PNKP-220ENST00000627232 MFAP2P55001 183 aa17.61■□□□□ 0.41
PNKP-220ENST00000627232 LGALS4P56470 323 aa17.61■□□□□ 0.41
PNKP-220ENST00000627232 TAS2R45P59539 299 aa17.61■□□□□ 0.41
PNKP-220ENST00000627232 ZNF674Q2M3X9 581 aa17.61■□□□□ 0.41
PNKP-220ENST00000627232 FAM24BQ8N5W8 94 aa17.61■□□□□ 0.41
PNKP-220ENST00000627232 C22orf15Q8WYQ4 148 aa17.61■□□□□ 0.41
PNKP-220ENST00000627232 MALSU1Q96EH3 234 aa17.61■□□□□ 0.41
PNKP-220ENST00000627232 SPOCK3Q9BQ16 436 aa17.61■□□□□ 0.41
PNKP-220ENST00000627232 TMEM167BQ9NRX6 74 aa17.61■□□□□ 0.41
PNKP-220ENST00000627232 IGKV1D-37A0A075B6S9 117 aa17.6■□□□□ 0.41
PNKP-220ENST00000627232 PSMB11A5LHX3 300 aa17.6■□□□□ 0.41
PNKP-220ENST00000627232 FCN1O00602 326 aa17.6■□□□□ 0.41
PNKP-220ENST00000627232 TOX4O94842 621 aa17.6■□□□□ 0.41
PNKP-220ENST00000627232 RAB5AP20339 215 aa17.6■□□□□ 0.41
PNKP-220ENST00000627232 GATA2P23769 480 aaPredicted RBP17.6■□□□□ 0.41
PNKP-220ENST00000627232 PQLC2Q6ZP29 291 aa17.6■□□□□ 0.41
PNKP-220ENST00000627232 MISP3Q96FF7 219 aa17.6■□□□□ 0.41
PNKP-220ENST00000627232 PFDN5Q99471 154 aa17.6■□□□□ 0.41
PNKP-220ENST00000627232 POLR3KQ9Y2Y1 108 aaPredicted RBP17.6■□□□□ 0.41
PNKP-220ENST00000627232 RND2P52198 227 aa17.59■□□□□ 0.41
PNKP-220ENST00000627232 EBI3Q14213 229 aa17.59■□□□□ 0.41
PNKP-220ENST00000627232 OR1L4Q8NGR5 311 aa17.59■□□□□ 0.41
PNKP-220ENST00000627232 SMG1Q96Q15 3661 aaKnown RBP17.59■□□□□ 0.41
PNKP-220ENST00000627232 A0A1W2PRD5 423 aa17.58■□□□□ 0.41
PNKP-220ENST00000627232 A0A1W2PRF3 423 aa17.58■□□□□ 0.41
PNKP-220ENST00000627232 A0A1W2PRM7 423 aa17.58■□□□□ 0.41
PNKP-220ENST00000627232 NPPCP23582 126 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms