RNA–Protein interactions for RNA: ENST00000621266.4

COL4A6-210, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,627 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-210ENST00000621266 SCN3AQ9NY46 2000 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 TDGF1P3P51864 188 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 ZP4Q12836 540 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 LCNL1Q6ZST4 164 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 FAM89BQ8N5H3 189 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 GATD1Q8NB37 220 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 ZNF721Q8TF20 911 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 MRPL20Q9BYC9 149 aaKnown RBP8.35□□□□□ -1.07
COL4A6-210ENST00000621266 SHISA3A0PJX4 238 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 PSMG4Q5JS54 123 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 CFAP161Q6P656 301 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 PIMREGQ9BSJ6 248 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 YAE1D1Q9NRH1 226 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 DXOO77932 396 aaKnown RBP8.35□□□□□ -1.07
COL4A6-210ENST00000621266 PYY3Q5JQD4 70 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 CCDC88CQ9P219 2028 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 PARP14Q460N5 1801 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 H7C1H1 209 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 MIA3Q5JRA6 1907 aa8.35□□□□□ -1.07
COL4A6-210ENST00000621266 CRYBA2P53672 197 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 ATP5J2P56134 94 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 KIR3DS1Q14943 382 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 GUSBP1Q15486 140 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 A0A1W2PRE2 83 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 NGFRP08138 427 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 LGALS1P09382 135 aaKnown RBP8.34□□□□□ -1.07
COL4A6-210ENST00000621266 FXYD7P58549 80 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 CCL20P78556 96 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 OR52E5Q8NH55 327 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 GNB1LQ9BYB4 327 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 PRR32B1ATL7 298 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 PSG3Q16557 428 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 ZNF625Q96I27 306 aaPredicted RBP8.34□□□□□ -1.07
COL4A6-210ENST00000621266 LHFPL6Q9Y693 200 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 IGKV1D-42A0A075B6H8 117 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 IGHV3OR16-8A0A075B7F1 116 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 IGLV1-36A0A0B4J1U3 117 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 CD33P20138 364 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 LCN12Q6JVE5 192 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 ZNF664Q8N3J9 261 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 GTF3AQ92664 365 aaKnown RBP8.34□□□□□ -1.07
COL4A6-210ENST00000621266 RNF126Q9BV68 326 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 MS4A6AQ9H2W1 248 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 PLNP26678 52 aa8.34□□□□□ -1.07
COL4A6-210ENST00000621266 SRSF1Q07955 248 aaKnown RBP eCLIP8.34□□□□□ -1.07
COL4A6-210ENST00000621266 FAM90A10PA6NDY2 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A18PA6NE21 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A16PA6NEW6 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A20PA6NIJ5 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A8PA6NJQ4 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A7PA6NKC0 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A22PA8MWA6 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A12PA8MX19 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A5PA8MXJ8 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A23PA8MXZ1 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 PROB1E7EW31 1015 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A15PP0C7V4 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A13PP0C7W8 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A14PP0C7W9 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM90A24PP0C7X0 464 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 LY6EQ16553 131 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FAM106AQ4KMX7 169 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 DEFB104AQ8WTQ1 72 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 DLX4Q92988 240 aaPredicted RBP8.34□□□□□ -1.08
COL4A6-210ENST00000621266 IFI27L1Q96BM0 104 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 CHCHD1Q96BP2 118 aaKnown RBP8.34□□□□□ -1.08
COL4A6-210ENST00000621266 DIRC2Q96SL1 478 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 CST9LQ9H4G1 147 aa8.34□□□□□ -1.08
COL4A6-210ENST00000621266 FOXA2Q9Y261 457 aaPredicted RBP8.34□□□□□ -1.08
COL4A6-210ENST00000621266 CEP290O15078 2479 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 TMEM14DPA8MWL7 114 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 PPIFP30405 207 aaKnown RBP8.33□□□□□ -1.08
COL4A6-210ENST00000621266 EGR4Q05215 589 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 CD69Q07108 199 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 PRSS53Q2L4Q9 553 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 SCRT1Q9BWW7 348 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 IFI27L2Q9H2X8 130 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 PILRAQ9UKJ1 303 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 SNRPD3P62318 126 aaKnown RBP8.33□□□□□ -1.08
COL4A6-210ENST00000621266 ZNF525Q8N782 197 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 OCC1Q8TAD7 63 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 NXT2Q9NPJ8 142 aaKnown RBP8.33□□□□□ -1.08
COL4A6-210ENST00000621266 IGKV1-8A0A0C4DH67 115 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 A0A0J9YW62 118 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 KCNK17Q96T54 332 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 LTBRP36941 435 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 IFI27P40305 119 aaPredicted RBP8.33□□□□□ -1.08
COL4A6-210ENST00000621266 GAGE2AQ6NT46 116 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 TMEM256Q8N2U0 113 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 EEF1AKMT3Q96AZ1 226 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 LTBP1Q14766 1721 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 UMODP07911 640 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 CDCP2Q5VXM1 449 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 OR9G4Q8NGQ1 327 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 DEPPQ9NTK1 212 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 JPT1Q9UK76 154 aa8.33□□□□□ -1.08
COL4A6-210ENST00000621266 MALP21145 153 aa8.32□□□□□ -1.08
COL4A6-210ENST00000621266 SLC25A47Q6Q0C1 308 aa8.32□□□□□ -1.08
COL4A6-210ENST00000621266 DUX3Q96PT4 197 aa8.32□□□□□ -1.08
COL4A6-210ENST00000621266 CABIN1Q9Y6J0 2220 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms