RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 MGAT4CQ9UBM8 478 aa15.28■□□□□ 0.04
UPF3A-211ENST00000618700 FBXL7Q9UJT9 491 aa15.28■□□□□ 0.04
UPF3A-211ENST00000618700 NDUFB8O95169 186 aa15.27■□□□□ 0.04
UPF3A-211ENST00000618700 IAPPP10997 89 aa15.27■□□□□ 0.04
UPF3A-211ENST00000618700 RUNX1Q01196 453 aa15.27■□□□□ 0.04
UPF3A-211ENST00000618700 C15orf32Q32M92 178 aa15.27■□□□□ 0.04
UPF3A-211ENST00000618700 NSUN5P1Q3KNT7 163 aa15.27■□□□□ 0.04
UPF3A-211ENST00000618700 SLC25A24Q6NUK1 477 aa15.27■□□□□ 0.04
UPF3A-211ENST00000618700 SLC24A4Q8NFF2 622 aa15.27■□□□□ 0.04
UPF3A-211ENST00000618700 TMEM170AQ8WVE7 144 aa15.27■□□□□ 0.04
UPF3A-211ENST00000618700 CIB3Q96Q77 187 aaPredicted RBP15.27■□□□□ 0.04
UPF3A-211ENST00000618700 RCL1Q9Y2P8 373 aaKnown RBP15.27■□□□□ 0.04
UPF3A-211ENST00000618700 I3L521 148 aa15.26■□□□□ 0.03
UPF3A-211ENST00000618700 SCGB1D2O95969 90 aa15.26■□□□□ 0.03
UPF3A-211ENST00000618700 LGALS1P09382 135 aaKnown RBP15.26■□□□□ 0.03
UPF3A-211ENST00000618700 C2orf83Q53S99 150 aa15.26■□□□□ 0.03
UPF3A-211ENST00000618700 THYN1Q9P016 225 aa15.26■□□□□ 0.03
UPF3A-211ENST00000618700 U3KQ87 197 aa15.26■□□□□ 0.03
UPF3A-211ENST00000618700 VWFP04275 2813 aa15.26■□□□□ 0.03
UPF3A-211ENST00000618700 FBN3Q75N90 2809 aa15.26■□□□□ 0.03
UPF3A-211ENST00000618700 K7EIM0 57 aa15.25■□□□□ 0.03
UPF3A-211ENST00000618700 WRBO00258 174 aa15.25■□□□□ 0.03
UPF3A-211ENST00000618700 LY86O95711 162 aa15.25■□□□□ 0.03
UPF3A-211ENST00000618700 IGHV3-11P01762 117 aa15.25■□□□□ 0.03
UPF3A-211ENST00000618700 NPY1RP25929 384 aa15.25■□□□□ 0.03
UPF3A-211ENST00000618700 SUB1P53999 127 aaKnown RBP eCLIP15.25■□□□□ 0.03
UPF3A-211ENST00000618700 ATP5G2Q06055 141 aa15.25■□□□□ 0.03
UPF3A-211ENST00000618700 EXOSC2Q13868 293 aaKnown RBP15.25■□□□□ 0.03
UPF3A-211ENST00000618700 FCN2Q15485 313 aa15.25■□□□□ 0.03
UPF3A-211ENST00000618700 ZNF343Q6P1L6 599 aa15.25■□□□□ 0.03
UPF3A-211ENST00000618700 NMES1Q9C002 83 aa15.25■□□□□ 0.03
UPF3A-211ENST00000618700 MED28Q9H204 178 aa15.25■□□□□ 0.03
UPF3A-211ENST00000618700 TRRAPQ9Y4A5 3859 aa15.24■□□□□ 0.03
UPF3A-211ENST00000618700 MFSD2BA6NFX1 497 aa15.24■□□□□ 0.03
UPF3A-211ENST00000618700 NUDT19A8MXV4 375 aa15.24■□□□□ 0.03
UPF3A-211ENST00000618700 K7EPK0 472 aa15.24■□□□□ 0.03
UPF3A-211ENST00000618700 SSSCA1O60232 199 aa15.24■□□□□ 0.03
UPF3A-211ENST00000618700 TMEM50AO95807 157 aa15.24■□□□□ 0.03
UPF3A-211ENST00000618700 CXCL3P19876 107 aa15.24■□□□□ 0.03
UPF3A-211ENST00000618700 ATP5IP56385 69 aaPredicted RBP15.24■□□□□ 0.03
UPF3A-211ENST00000618700 RRAS2P62070 204 aaPredicted RBP15.24■□□□□ 0.03
UPF3A-211ENST00000618700 C8orf86Q6ZUL3 223 aa15.24■□□□□ 0.03
UPF3A-211ENST00000618700 OR11H7Q8NGC8 314 aa15.24■□□□□ 0.03
UPF3A-211ENST00000618700 MISP3Q96FF7 219 aa15.24■□□□□ 0.03
UPF3A-211ENST00000618700 OR5B12Q96R08 314 aa15.24■□□□□ 0.03
UPF3A-211ENST00000618700 C11orf1Q9H5F2 150 aa15.24■□□□□ 0.03
UPF3A-211ENST00000618700 C15orf62A8K5M9 175 aa15.23■□□□□ 0.03
UPF3A-211ENST00000618700 I3L2K1 104 aa15.23■□□□□ 0.03
UPF3A-211ENST00000618700 CORTO00230 105 aa15.23■□□□□ 0.03
UPF3A-211ENST00000618700 IFNA10P01566 189 aa15.23■□□□□ 0.03
UPF3A-211ENST00000618700 CYCSP99999 105 aaKnown RBP15.23■□□□□ 0.03
UPF3A-211ENST00000618700 RAB32Q13637 225 aa15.23■□□□□ 0.03
UPF3A-211ENST00000618700 ETV3LQ6ZN32 361 aa15.23■□□□□ 0.03
UPF3A-211ENST00000618700 VN1R17PQ8TDU5 208 aa15.23■□□□□ 0.03
UPF3A-211ENST00000618700 WDR89Q96FK6 387 aaPredicted RBP15.23■□□□□ 0.03
UPF3A-211ENST00000618700 CXorf58Q96LI9 332 aa15.23■□□□□ 0.03
UPF3A-211ENST00000618700 CCDC140Q96MF4 163 aa15.23■□□□□ 0.03
UPF3A-211ENST00000618700 RAB40CQ96S21 281 aa15.23■□□□□ 0.03
UPF3A-211ENST00000618700 M0QZ24 198 aa15.22■□□□□ 0.03
UPF3A-211ENST00000618700 PAX9P55771 341 aa15.22■□□□□ 0.03
UPF3A-211ENST00000618700 TAS2R30P59541 319 aa15.22■□□□□ 0.03
UPF3A-211ENST00000618700 Q6ZNX1 250 aa15.22■□□□□ 0.03
UPF3A-211ENST00000618700 NOXA1Q86UR1 476 aa15.22■□□□□ 0.03
UPF3A-211ENST00000618700 ZNF502Q8TBZ5 544 aa15.22■□□□□ 0.03
UPF3A-211ENST00000618700 RNASEH2CQ8TDP1 164 aaKnown RBP15.22■□□□□ 0.03
UPF3A-211ENST00000618700 EEF1AKMT3Q96AZ1 226 aa15.22■□□□□ 0.03
UPF3A-211ENST00000618700 RAX2Q96IS3 184 aa15.22■□□□□ 0.03
UPF3A-211ENST00000618700 SMIM8Q96KF7 97 aa15.22■□□□□ 0.03
UPF3A-211ENST00000618700 OR4C12Q96R67 309 aa15.22■□□□□ 0.03
UPF3A-211ENST00000618700 LSM5Q9Y4Y9 91 aaKnown RBP15.22■□□□□ 0.03
UPF3A-211ENST00000618700 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.21■□□□□ 0.03
UPF3A-211ENST00000618700 TSPAN15O95858 294 aa15.21■□□□□ 0.03
UPF3A-211ENST00000618700 MT-CO2P00403 227 aa15.21■□□□□ 0.03
UPF3A-211ENST00000618700 S100A10P60903 97 aa15.21■□□□□ 0.03
UPF3A-211ENST00000618700 DEFB136Q30KP8 78 aa15.21■□□□□ 0.03
UPF3A-211ENST00000618700 OR4F17Q8NGA8 305 aa15.21■□□□□ 0.03
UPF3A-211ENST00000618700 SCARB1Q8WTV0 552 aa15.21■□□□□ 0.03
UPF3A-211ENST00000618700 OR4F4Q96R69 305 aa15.21■□□□□ 0.03
UPF3A-211ENST00000618700 FNDC4Q9H6D8 234 aaPredicted RBP15.21■□□□□ 0.03
UPF3A-211ENST00000618700 S4R3C0 116 aa15.21■□□□□ 0.03
UPF3A-211ENST00000618700 TRBV7-1A0A0A6YYK4 115 aa15.2■□□□□ 0.02
UPF3A-211ENST00000618700 IGHV3-21A0A0B4J1V1 117 aa15.2■□□□□ 0.02
UPF3A-211ENST00000618700 H3BP45 60 aa15.2■□□□□ 0.02
UPF3A-211ENST00000618700 TSC22D2O75157 780 aa15.2■□□□□ 0.02
UPF3A-211ENST00000618700 TRBV12-3P01733 135 aa15.2■□□□□ 0.02
UPF3A-211ENST00000618700 RPP30P78346 268 aaKnown RBP15.2■□□□□ 0.02
UPF3A-211ENST00000618700 FHL3Q13643 280 aa15.2■□□□□ 0.02
UPF3A-211ENST00000618700 FAM209BQ5JX69 171 aa15.2■□□□□ 0.02
UPF3A-211ENST00000618700 PINX1Q96BK5 328 aaKnown RBP15.2■□□□□ 0.02
UPF3A-211ENST00000618700 ATP6V0BQ99437 205 aa15.2■□□□□ 0.02
UPF3A-211ENST00000618700 C21orf62Q9NYP8 219 aa15.2■□□□□ 0.02
UPF3A-211ENST00000618700 PSENENQ9NZ42 101 aa15.2■□□□□ 0.02
UPF3A-211ENST00000618700 F8W735 103 aaPredicted RBP15.19■□□□□ 0.02
UPF3A-211ENST00000618700 CCL24O00175 119 aa15.19■□□□□ 0.02
UPF3A-211ENST00000618700 IGHV3-23P01764 117 aa15.19■□□□□ 0.02
UPF3A-211ENST00000618700 SPANXN5Q5MJ07 72 aa15.19■□□□□ 0.02
UPF3A-211ENST00000618700 PPP1R1CQ8WVI7 109 aa15.19■□□□□ 0.02
UPF3A-211ENST00000618700 DUX3Q96PT4 197 aa15.19■□□□□ 0.02
UPF3A-211ENST00000618700 PEF1Q9UBV8 284 aaKnown RBP15.19■□□□□ 0.02
UPF3A-211ENST00000618700 STRAPQ9Y3F4 350 aaKnown RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms