RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 RSG1Q9BU20 258 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 FNDC10F2Z333 226 aa11.25□□□□□ -0.61
USP39-220ENST00000613444 SUB1P53999 127 aaKnown RBP eCLIP11.25□□□□□ -0.616e-9■■■□□ 18
USP39-220ENST00000613444 CENPVQ7Z7K6 275 aaPredicted RBP11.25□□□□□ -0.61
USP39-220ENST00000613444 PITPNC1Q9UKF7 332 aa11.25□□□□□ -0.61
USP39-220ENST00000613444 LSM4Q9Y4Z0 139 aaKnown RBP11.25□□□□□ -0.61
USP39-220ENST00000613444 SULT1A2P50226 295 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 SGMS2Q8NHU3 365 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 SCGB1C1Q8TD33 95 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 ABHD5Q8WTS1 349 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 GNPNAT1Q96EK6 184 aaPredicted RBP11.24□□□□□ -0.61
USP39-220ENST00000613444 NPIPB5A8MRT5 1133 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 ATP6V0E1O15342 81 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 GPX4P36969 197 aaPredicted RBP11.24□□□□□ -0.61
USP39-220ENST00000613444 GAMTQ14353 236 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 SLC25A24Q6NUK1 477 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 C16orf82Q7Z2V1 217 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 TTC9CQ8N5M4 171 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 LFNGQ8NES3 379 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 CACNG8Q8WXS5 425 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 WNT10AQ9GZT5 417 aa11.24□□□□□ -0.61
USP39-220ENST00000613444 FGF7P21781 194 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 BTNL8Q6UX41 500 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 TEX29Q8N6K0 151 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 OR2G3Q8NGZ4 309 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 RNF141Q8WVD5 230 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 PSMG3Q9BT73 122 aaPredicted RBP11.23□□□□□ -0.61
USP39-220ENST00000613444 NPCDR1Q9BY65 106 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 NPVFQ9HCQ7 196 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 MRPL36Q9P0J6 103 aaKnown RBP11.23□□□□□ -0.61
USP39-220ENST00000613444 CUBNO60494 3623 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 IGKV1OR2-108A0A075B7D4 117 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 SPNS3Q6ZMD2 512 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 SLC16A13Q7RTY0 426 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 OR5R1Q8NH85 324 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 FANCD2OSQ96PS1 177 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 PARP11Q9NR21 331 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 YAE1D1Q9NRH1 226 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 TIMM9Q9Y5J7 89 aa11.23□□□□□ -0.61
USP39-220ENST00000613444 SMCO3A2RU48 225 aa11.22□□□□□ -0.61
USP39-220ENST00000613444 M0QZK8 103 aa11.22□□□□□ -0.61
USP39-220ENST00000613444 BLCAPP62952 87 aa11.22□□□□□ -0.61
USP39-220ENST00000613444 C19orf54Q5BKX5 351 aa11.22□□□□□ -0.61
USP39-220ENST00000613444 TMEM182Q6ZP80 229 aaPredicted RBP11.22□□□□□ -0.61
USP39-220ENST00000613444 OR2T6Q8NHC8 308 aa11.22□□□□□ -0.61
USP39-220ENST00000613444 MGST2Q99735 147 aa11.22□□□□□ -0.61
USP39-220ENST00000613444 SMR3AQ99954 134 aa11.22□□□□□ -0.61
USP39-220ENST00000613444 MTORP42345 2549 aa11.22□□□□□ -0.61
USP39-220ENST00000613444 OPRK1P41145 380 aa11.21□□□□□ -0.61
USP39-220ENST00000613444 CRIP2P52943 208 aaPredicted RBP11.21□□□□□ -0.61
USP39-220ENST00000613444 RAB14P61106 215 aa11.21□□□□□ -0.61
USP39-220ENST00000613444 Q6ZS46 218 aa11.21□□□□□ -0.61
USP39-220ENST00000613444 TMEM144Q7Z5S9 345 aa11.21□□□□□ -0.61
USP39-220ENST00000613444 MISP3Q96FF7 219 aa11.21□□□□□ -0.61
USP39-220ENST00000613444 HIVEP1P15822 2718 aa11.21□□□□□ -0.61
USP39-220ENST00000613444 IGLV11-55A0A075B6I3 123 aa11.21□□□□□ -0.62
USP39-220ENST00000613444 I3L2K1 104 aa11.21□□□□□ -0.62
USP39-220ENST00000613444 CORTO00230 105 aa11.21□□□□□ -0.62
USP39-220ENST00000613444 MPDU1O75352 247 aa11.21□□□□□ -0.62
USP39-220ENST00000613444 IGHV3-48P01763 117 aa11.21□□□□□ -0.62
USP39-220ENST00000613444 IGHG2P01859 326 aa11.21□□□□□ -0.62
USP39-220ENST00000613444 PRH1P02810 166 aa11.21□□□□□ -0.62
USP39-220ENST00000613444 FHITP49789 147 aa11.21□□□□□ -0.62
USP39-220ENST00000613444 KLK9Q2XQG4 91 aa11.21□□□□□ -0.62
USP39-220ENST00000613444 CXorf58Q96LI9 332 aa11.21□□□□□ -0.62
USP39-220ENST00000613444 VPREB3Q9UKI3 123 aa11.21□□□□□ -0.62
USP39-220ENST00000613444 KLK9Q9UKQ9 250 aa11.21□□□□□ -0.62
USP39-220ENST00000613444 G3V318 75 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 HOXA3O43365 443 aaPredicted RBP11.2□□□□□ -0.62
USP39-220ENST00000613444 SERF2P84101 59 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 AKIRIN2Q53H80 203 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 TEPPQ6URK8 271 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 SLC7A5P1Q8MH63 180 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 OR5T1Q8NG75 326 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 LRRC20Q8TCA0 184 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 GGTLC1Q9BX51 225 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 LINC00862A6NCI5 91 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 ZNF705EA8MWA4 302 aaPredicted RBP11.2□□□□□ -0.62
USP39-220ENST00000613444 K7EIM0 57 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 MT-CO2P00403 227 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 IGF1P05019 195 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 DEFA4P12838 97 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 AKR1C1Q04828 323 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 ACSM6Q6P461 480 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 SIGLECL1Q8N7X8 197 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 OR1L6Q8NGR2 347 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 FAM110DQ8TAY7 271 aaPredicted RBP11.2□□□□□ -0.62
USP39-220ENST00000613444 SAT2Q96F10 170 aaPredicted RBP11.2□□□□□ -0.62
USP39-220ENST00000613444 VSIRQ9H7M9 311 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 TMEM160Q9NX00 188 aa11.2□□□□□ -0.62
USP39-220ENST00000613444 UMAD1C9J7I0 102 aa11.19□□□□□ -0.62
USP39-220ENST00000613444 RAB5CP51148 216 aa11.19□□□□□ -0.62
USP39-220ENST00000613444 ECSCRQ19T08 205 aa11.19□□□□□ -0.62
USP39-220ENST00000613444 UNQ5815/PRO19632Q6UWF5 114 aa11.19□□□□□ -0.62
USP39-220ENST00000613444 SLC35E1Q96K37 410 aa11.19□□□□□ -0.62
USP39-220ENST00000613444 TMEM68Q96MH6 324 aa11.19□□□□□ -0.62
USP39-220ENST00000613444 TMUB1Q9BVT8 246 aa11.19□□□□□ -0.62
USP39-220ENST00000613444 IGKV1D-37A0A075B6S9 117 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 IGHV3-21A0A0B4J1V1 117 aa11.18□□□□□ -0.62
USP39-220ENST00000613444 TRIM77I1YAP6 450 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms