RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 PLAUP00749 431 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 PSG2P11465 335 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 RPL8P62917 257 aaKnown RBP4.2□□□□□ -1.74
VPS13D-213ENST00000613099 HHEXQ03014 270 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 OCC1Q8TAD7 63 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 TNFRSF19Q9NS68 423 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 JPT1Q9UK76 154 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 C9JAW5 83 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 EFEMP2O95967 443 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 FOXA3P55318 350 aaPredicted RBP4.2□□□□□ -1.74
VPS13D-213ENST00000613099 RPL32P62910 135 aaKnown RBP4.2□□□□□ -1.74
VPS13D-213ENST00000613099 RNPS1Q15287 305 aaKnown RBP4.2□□□□□ -1.74
VPS13D-213ENST00000613099 HIGD1AQ9Y241 93 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 FAM90A2PQ658T7 463 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 H1FXQ92522 213 aaKnown RBP4.2□□□□□ -1.74
VPS13D-213ENST00000613099 RNF166Q96A37 237 aaPredicted RBP4.2□□□□□ -1.74
VPS13D-213ENST00000613099 PYGO2Q9BRQ0 406 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 FRG2CA6NGY1 282 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 FAM157AC9JC47 383 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 E9PQ18 207 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 NTN1O95631 604 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 CD70P32970 193 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 H3BMG7 143 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 CRYGCP07315 174 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 SFTPA2Q8IWL1 248 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 SFTPA1Q8IWL2 248 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 TNFRSF18Q9Y5U5 241 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 FGFRL1Q8N441 504 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 MRPL43Q8N983 215 aaKnown RBP4.2□□□□□ -1.74
VPS13D-213ENST00000613099 PRSS29PA6NIE9 313 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 IGHV3-7P01780 117 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 ZXDAP98168 799 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 ID3Q02535 119 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 LY6G5CQ5SRR4 150 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 IGFLR1Q9H665 355 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 PNRC2Q9NPJ4 139 aaKnown RBP4.2□□□□□ -1.74
VPS13D-213ENST00000613099 CELA3AP09093 270 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 PRTN3P24158 256 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 PRNTQ86SH4 94 aa4.2□□□□□ -1.74
VPS13D-213ENST00000613099 CCL16O15467 120 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 DMRTC1Q5HYR2 192 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 SCGB3A1Q96QR1 104 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 TMUB1Q9BVT8 246 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 DYSFO75923 2080 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 NPIPB5A8MRT5 1133 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 SRSF1Q07955 248 aaKnown RBP eCLIP4.19□□□□□ -1.743e-6■■■■□ 22.3
VPS13D-213ENST00000613099 FOXC2Q99958 501 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 ONECUT1Q9UBC0 465 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 MRPL33O75394 65 aaKnown RBP4.19□□□□□ -1.74
VPS13D-213ENST00000613099 IGLL1P15814 213 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 THAP10Q9P2Z0 257 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-213ENST00000613099 WIPI1Q5MNZ9 446 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-213ENST00000613099 DNAJC30Q96LL9 226 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 PHF7Q9BWX1 381 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-213ENST00000613099 SLC25A10Q9UBX3 287 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-213ENST00000613099 OR1L8Q8NGR8 309 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 GATAD1Q8WUU5 269 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 VSTM2LQ96N03 204 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 TMSB15BA0A087X1C1 80 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 P04436 131 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 TM2D1Q9BX74 207 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 RARRES3Q9UL19 164 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 C3AR1Q16581 482 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 SFTA2Q6UW10 78 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 APOBEC4Q8WW27 367 aaKnown RBP4.19□□□□□ -1.74
VPS13D-213ENST00000613099 H0YJW9 148 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 IGHV4-39P01824 125 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 C5orf24Q7Z6I8 188 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 WFDC12Q8WWY7 111 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 COL4A6Q14031 1691 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 ALPK3Q96L96 1907 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 SRYQ05066 204 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 FAM166AQ6J272 317 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 FAM90A1Q86YD7 464 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 CD55P08174 381 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 GLRXP35754 106 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 HGFACQ04756 655 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 C16orf52Q8NHV5 167 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 PEX7O00628 323 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 TMPRSS2O15393 492 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 PRKNO60260 465 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-213ENST00000613099 INAFM2P0DMQ5 153 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 CA6P23280 308 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 ATG4DQ86TL0 474 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-213ENST00000613099 CXCL16Q9H2A7 254 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 MED13LQ71F56 2210 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 CFPP27918 469 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 CLLU1OSQ5K130 101 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 CHAC1Q9BUX1 264 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 R3HDMLQ9H3Y0 253 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 HCFC2Q9Y5Z7 792 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 IGHV1-24A0A0C4DH33 117 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 LGALS1P09382 135 aaKnown RBP4.19□□□□□ -1.74
VPS13D-213ENST00000613099 RRN3P1Q2M238 152 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 C20orf173Q96LM9 149 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 RNF208Q9H0X6 261 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 MMP17Q9ULZ9 603 aa4.19□□□□□ -1.74
VPS13D-213ENST00000613099 CENPVQ7Z7K6 275 aaPredicted RBP4.18□□□□□ -1.74
VPS13D-213ENST00000613099 CACNG8Q8WXS5 425 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 TNCP24821 2201 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms