RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 Q56UQ5 140 aa12.57□□□□□ -0.4
USHBP1-208ENST00000598309 ZNF57Q68EA5 555 aaPredicted RBP12.57□□□□□ -0.4
USHBP1-208ENST00000598309 DEDD2Q8WXF8 326 aa12.57□□□□□ -0.4
USHBP1-208ENST00000598309 MISP3Q96FF7 219 aa12.57□□□□□ -0.4
USHBP1-208ENST00000598309 GALNT14Q96FL9 552 aa12.57□□□□□ -0.4
USHBP1-208ENST00000598309 TXN2Q99757 166 aa12.57□□□□□ -0.4
USHBP1-208ENST00000598309 MCUBQ9NWR8 336 aa12.57□□□□□ -0.4
USHBP1-208ENST00000598309 MRPL27Q9P0M9 148 aaKnown RBP12.57□□□□□ -0.4
USHBP1-208ENST00000598309 TMEM56-RWDD3S4R434 201 aa12.57□□□□□ -0.4
USHBP1-208ENST00000598309 ADMP35318 185 aa12.56□□□□□ -0.4
USHBP1-208ENST00000598309 SNCAP37840 140 aa12.56□□□□□ -0.4
USHBP1-208ENST00000598309 CD81P60033 236 aa12.56□□□□□ -0.4
USHBP1-208ENST00000598309 ZNF79Q15937 498 aa12.56□□□□□ -0.4
USHBP1-208ENST00000598309 PVRIGQ6DKI7 326 aa12.56□□□□□ -0.4
USHBP1-208ENST00000598309 CCDC190Q86UF4 302 aa12.56□□□□□ -0.4
USHBP1-208ENST00000598309 SELENOHQ8IZQ5 122 aaKnown RBP12.56□□□□□ -0.4
USHBP1-208ENST00000598309 UBAC2Q8NBM4 344 aa12.56□□□□□ -0.4
USHBP1-208ENST00000598309 LHFPL5Q8TAF8 219 aa12.56□□□□□ -0.4
USHBP1-208ENST00000598309 IL22RA2Q969J5 263 aa12.56□□□□□ -0.4
USHBP1-208ENST00000598309 CHRDL1Q9BU40 450 aa12.56□□□□□ -0.4
USHBP1-208ENST00000598309 DAZ1Q9NQZ3 744 aaKnown RBP12.56□□□□□ -0.4
USHBP1-208ENST00000598309 MLXQ9UH92 298 aa12.56□□□□□ -0.4
USHBP1-208ENST00000598309 TRAV25A0A0B4J276 109 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 IGHV3-35A0A0C4DH35 117 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 CORTO00230 105 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 MT-CO2P00403 227 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 ETV6P41212 452 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 HOXA1P49639 335 aaPredicted RBP12.55□□□□□ -0.4
USHBP1-208ENST00000598309 MFAP4P55083 255 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 RELQ04864 619 aaPredicted RBP12.55□□□□□ -0.4
USHBP1-208ENST00000598309 GUCA2BQ16661 112 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 SPINK9Q5DT21 86 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 TMEM61Q8N0U2 210 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 OR52E5Q8NH55 327 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 TMEM230Q96A57 120 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 NEURL2Q9BR09 285 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 TM2D3Q9BRN9 247 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 ZMAT4Q9H898 229 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 ENY2Q9NPA8 101 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.55□□□□□ -0.4
USHBP1-208ENST00000598309 KCNIP3Q9Y2W7 256 aa12.55□□□□□ -0.4
USHBP1-208ENST00000598309 K7EMT4 169 aa12.54□□□□□ -0.4
USHBP1-208ENST00000598309 NUPL2O15504 423 aaKnown RBP12.54□□□□□ -0.4
USHBP1-208ENST00000598309 CTSGP08311 255 aa12.54□□□□□ -0.4
USHBP1-208ENST00000598309 SUB1P53999 127 aaKnown RBP eCLIP12.54□□□□□ -0.4
USHBP1-208ENST00000598309 SPCS3P61009 180 aa12.54□□□□□ -0.4
USHBP1-208ENST00000598309 TMEM268Q5VZI3 342 aa12.54□□□□□ -0.4
USHBP1-208ENST00000598309 BTNL8Q6UX41 500 aa12.54□□□□□ -0.4
USHBP1-208ENST00000598309 Q6ZRM9 215 aa12.54□□□□□ -0.4
USHBP1-208ENST00000598309 TOMM5Q8N4H5 51 aa12.54□□□□□ -0.4
USHBP1-208ENST00000598309 WDR89Q96FK6 387 aaPredicted RBP12.54□□□□□ -0.4
USHBP1-208ENST00000598309 RCHY1Q96PM5 261 aa12.54□□□□□ -0.4
USHBP1-208ENST00000598309 TUBA4BQ9H853 241 aa12.54□□□□□ -0.4
USHBP1-208ENST00000598309 CACFD1Q9UGQ2 172 aa12.54□□□□□ -0.4
USHBP1-208ENST00000598309 STAB2Q8WWQ8 2551 aa12.53□□□□□ -0.4
USHBP1-208ENST00000598309 C15orf62A8K5M9 175 aa12.53□□□□□ -0.4
USHBP1-208ENST00000598309 RNASE2P10153 161 aaKnown RBP12.53□□□□□ -0.4
USHBP1-208ENST00000598309 TMEM187Q14656 261 aa12.53□□□□□ -0.4
USHBP1-208ENST00000598309 SPANXN2Q5MJ10 180 aa12.53□□□□□ -0.4
USHBP1-208ENST00000598309 SLC16A13Q7RTY0 426 aa12.53□□□□□ -0.4
USHBP1-208ENST00000598309 PINX1Q96BK5 328 aaKnown RBP12.53□□□□□ -0.4
USHBP1-208ENST00000598309 CACNG5Q9UF02 275 aa12.53□□□□□ -0.4
USHBP1-208ENST00000598309 PIGBOS1A0A0B4J2F0 54 aa12.52□□□□□ -0.41
USHBP1-208ENST00000598309 CD7P09564 240 aa12.52□□□□□ -0.41
USHBP1-208ENST00000598309 SRPXP78539 464 aa12.52□□□□□ -0.41
USHBP1-208ENST00000598309 BSXQ3C1V8 233 aa12.52□□□□□ -0.41
USHBP1-208ENST00000598309 ANKRD55Q3KP44 614 aa12.52□□□□□ -0.41
USHBP1-208ENST00000598309 DUSP18Q8NEJ0 188 aa12.52□□□□□ -0.41
USHBP1-208ENST00000598309 GPR146Q96CH1 333 aa12.52□□□□□ -0.41
USHBP1-208ENST00000598309 C20orf24Q9BUV8 137 aa12.52□□□□□ -0.41
USHBP1-208ENST00000598309 A0A0B4J2A0 478 aa12.51□□□□□ -0.41
USHBP1-208ENST00000598309 GNG7O60262 68 aa12.51□□□□□ -0.41
USHBP1-208ENST00000598309 ANXA3P12429 323 aa12.51□□□□□ -0.41
USHBP1-208ENST00000598309 AKR1C4P17516 323 aa12.51□□□□□ -0.41
USHBP1-208ENST00000598309 NPBWR1P48145 328 aa12.51□□□□□ -0.41
USHBP1-208ENST00000598309 SUPT4H1P63272 117 aaKnown RBP12.51□□□□□ -0.41
USHBP1-208ENST00000598309 RBPMS2Q6ZRY4 209 aaKnown RBP12.51□□□□□ -0.41
USHBP1-208ENST00000598309 ZNF414Q96IQ9 312 aa12.51□□□□□ -0.41
USHBP1-208ENST00000598309 OR10C1Q96KK4 312 aa12.51□□□□□ -0.41
USHBP1-208ENST00000598309 SPAG8Q99932 426 aaPredicted RBP12.51□□□□□ -0.41
USHBP1-208ENST00000598309 SRRQ9GZT4 340 aa12.51□□□□□ -0.41
USHBP1-208ENST00000598309 SHPKQ9UHJ6 478 aa12.51□□□□□ -0.41
USHBP1-208ENST00000598309 OR11H12B2RN74 326 aa12.5□□□□□ -0.41
USHBP1-208ENST00000598309 SCAF4O95104 1147 aaKnown RBP12.5□□□□□ -0.41
USHBP1-208ENST00000598309 SULT1A3P0DMM9 295 aa12.5□□□□□ -0.41
USHBP1-208ENST00000598309 SULT1A4P0DMN0 295 aa12.5□□□□□ -0.41
USHBP1-208ENST00000598309 HTR2BP41595 481 aa12.5□□□□□ -0.41
USHBP1-208ENST00000598309 HAGHQ16775 308 aa12.5□□□□□ -0.41
USHBP1-208ENST00000598309 LINC00322Q6ZN03 302 aaPredicted RBP12.5□□□□□ -0.41
USHBP1-208ENST00000598309 LGI3Q8N145 548 aa12.5□□□□□ -0.41
USHBP1-208ENST00000598309 OR52B4Q8NGK2 314 aa12.5□□□□□ -0.41
USHBP1-208ENST00000598309 SLC25A21Q9BQT8 299 aaPredicted RBP12.5□□□□□ -0.41
USHBP1-208ENST00000598309 SPATA25Q9BR10 227 aa12.5□□□□□ -0.41
USHBP1-208ENST00000598309 TSPAN4O14817 238 aa12.49□□□□□ -0.41
USHBP1-208ENST00000598309 IGHV3-48P01763 117 aa12.49□□□□□ -0.41
USHBP1-208ENST00000598309 CCR6P51684 374 aa12.49□□□□□ -0.41
USHBP1-208ENST00000598309 TMEM128Q5BJH2 165 aa12.49□□□□□ -0.41
USHBP1-208ENST00000598309 NMSQ5H8A3 153 aa12.49□□□□□ -0.41
USHBP1-208ENST00000598309 LAMTOR1Q6IAA8 161 aa12.49□□□□□ -0.41
USHBP1-208ENST00000598309 NDUFA13Q9P0J0 144 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms