RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 C1orf122Q6ZSJ8 110 aa13.65□□□□□ -0.22
SHKBP1-216ENST00000598201 TMEM144Q7Z5S9 345 aa13.65□□□□□ -0.22
SHKBP1-216ENST00000598201 MMD2Q8IY49 270 aa13.65□□□□□ -0.22
SHKBP1-216ENST00000598201 FBXL15Q9H469 300 aa13.65□□□□□ -0.22
SHKBP1-216ENST00000598201 ABCA12Q86UK0 2595 aa13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 IGLC7A0M8Q6 106 aa13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 H3BQ15 152 aa13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 SOX15O60248 233 aa13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 VENTXO95231 258 aa13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 BTF3P20290 206 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 FBLN7Q53RD9 439 aa13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 FAM90A2PQ658T7 463 aa13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 KIR3DL3Q8N743 410 aa13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 CFHR4Q92496 578 aa13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 UNKLQ9H9P5 680 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 APCP25054 2843 aa13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 WNK2Q9Y3S1 2297 aa13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 SPG11Q96JI7 2443 aa13.64□□□□□ -0.23
SHKBP1-216ENST00000598201 FCN1O00602 326 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 IFNA1P01562 189 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 LINC00869P0C866 280 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 RPL29P47914 159 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 CD81P60033 236 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 SSBP2P81877 361 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 PRR20EP86478 221 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 PRR20CP86479 221 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 PRR20DP86480 221 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 PRR20BP86481 221 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 PRR20AP86496 221 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 RBMS3Q6XE24 437 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 PPP1R27Q86WC6 154 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 OR2T6Q8NHC8 308 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 FNDC4Q9H6D8 234 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 SLC45A2Q9UMX9 530 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 FLNBO75369 2602 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 A0A1W2PPV4 95 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 APELAP0DMC3 54 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 HOXB4P17483 251 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 CD24P25063 80 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 RPL27AP46776 148 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 GNB1P62873 340 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 RAB31Q13636 194 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 FAM209BQ5JX69 171 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 C19orf35Q6ZS72 473 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 SLC16A13Q7RTY0 426 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 DYNAPQ8N1N2 210 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 C12orf57Q99622 126 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 CCL19Q99731 98 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 SIRPDQ9H106 197 aa13.63□□□□□ -0.23
SHKBP1-216ENST00000598201 AREGP15514 252 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 COMPP49747 757 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 SLC35E3Q7Z769 313 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 ABHD5Q8WTS1 349 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 KCNIP2Q9NS61 270 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 CSMD2Q7Z408 3487 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 IGHV2-70DA0A0C4DH43 119 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 ACTL6BO94805 426 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 IGHV3-48P01763 117 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 GATA2P23769 480 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 OR10J1P30954 320 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 CEACAM3P40198 252 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 MEF2BQ02080 365 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 HABP2Q14520 560 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 SPATA31B1PQ5VZV4 182 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 CACNG8Q8WXS5 425 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 RNF5Q99942 180 aa13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 SEPSECSQ9HD40 501 aaKnown RBP13.62□□□□□ -0.23
SHKBP1-216ENST00000598201 PAGE4O60829 102 aa13.61□□□□□ -0.23
SHKBP1-216ENST00000598201 GPX4P36969 197 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-216ENST00000598201 PSMB3P49720 205 aa13.61□□□□□ -0.23
SHKBP1-216ENST00000598201 MFAP2P55001 183 aa13.61□□□□□ -0.23
SHKBP1-216ENST00000598201 SSX2Q16385 188 aa13.61□□□□□ -0.23
SHKBP1-216ENST00000598201 ACY3Q96HD9 319 aa13.61□□□□□ -0.23
SHKBP1-216ENST00000598201 TEX22C9J3V5 150 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 MAS1LP35410 378 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 RNASEH2CQ8TDP1 164 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 MANBALQ9NQG1 85 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 SMCO4Q9NRQ5 59 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 MRPL36Q9P0J6 103 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 STAG3L2P0CL84 134 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 STAG3L3P0CL85 134 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 ARL14EPLP0DKL9 152 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 SUB1P53999 127 aaKnown RBP eCLIP13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 RHEBQ15382 184 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 MMDQ15546 238 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 TMEM249Q2WGJ8 235 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 RUSC1-AS1Q66K80 236 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 SVEP1Q4LDE5 3571 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 ITPR2Q14571 2701 aa13.6□□□□□ -0.23
SHKBP1-216ENST00000598201 PDLIM4P50479 330 aa13.59□□□□□ -0.23
SHKBP1-216ENST00000598201 SSTP61278 116 aa13.59□□□□□ -0.23
SHKBP1-216ENST00000598201 SLC35E1Q96K37 410 aa13.59□□□□□ -0.23
SHKBP1-216ENST00000598201 TBX15Q96SF7 602 aa13.59□□□□□ -0.23
SHKBP1-216ENST00000598201 NIPSNAP3BQ9BS92 247 aa13.59□□□□□ -0.23
SHKBP1-216ENST00000598201 POLQO75417 2590 aa13.59□□□□□ -0.23
SHKBP1-216ENST00000598201 TOX4O94842 621 aa13.59□□□□□ -0.23
SHKBP1-216ENST00000598201 PLGLAQ15195 96 aa13.59□□□□□ -0.23
SHKBP1-216ENST00000598201 PVRIGQ6DKI7 326 aa13.59□□□□□ -0.23
SHKBP1-216ENST00000598201 ISOC2Q96AB3 205 aa13.59□□□□□ -0.23
SHKBP1-216ENST00000598201 TVP23CQ96ET8 276 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms