RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 TMEM56Q96MV1 263 aa7.25□□□□□ -1.25
TRIM28-210ENST00000597618 TRAV1-2A0A0B4J238 106 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 A0A1W2PS18 150 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 K7EQG2 157 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 CASQ2O14958 399 aaPredicted RBP7.24□□□□□ -1.25
TRIM28-210ENST00000597618 SNAPC5O75971 98 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 SCGNO76038 276 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 ZNF688P0C7X2 276 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 SPART-AS1P0CW21 52 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 MYL9P24844 172 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 TNP2Q05952 138 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 MLLT11Q13015 90 aaPredicted RBP7.24□□□□□ -1.25
TRIM28-210ENST00000597618 TOMM20LQ6UXN7 152 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 STXBP6Q8NFX7 210 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 C1QTNF4Q9BXJ3 329 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 SLC5A7Q9GZV3 580 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 RNF167Q9H6Y7 350 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 SCN3BQ9NY72 215 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 PRNDQ9UKY0 176 aa7.24□□□□□ -1.25
TRIM28-210ENST00000597618 TEX48A0A1B0GUV7 120 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 TMEM189A5PLL7 270 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 SSX5O60225 188 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 MT-CO2P00403 227 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 RAB3BP20337 219 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 FGF9P31371 208 aaPredicted RBP7.23□□□□□ -1.25
TRIM28-210ENST00000597618 FAM3BP58499 235 aaPredicted RBP7.23□□□□□ -1.25
TRIM28-210ENST00000597618 FXYD4P59646 89 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 NUTF2P61970 127 aaKnown RBP7.23□□□□□ -1.25
TRIM28-210ENST00000597618 ZNF818PQ6ZRF7 136 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 CADM3Q8N126 398 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 BORCS5Q969J3 196 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 ZFAND3Q9H8U3 227 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 FKBP11Q9NYL4 201 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 NSG2Q9Y328 171 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 PUS1Q9Y606 427 aaKnown RBP eCLIP7.23□□□□□ -1.25
TRIM28-210ENST00000597618 AGRNO00468 2067 aa7.23□□□□□ -1.25
TRIM28-210ENST00000597618 IGHV3-48P01763 117 aa7.22□□□□□ -1.25
TRIM28-210ENST00000597618 F2RP25116 425 aa7.22□□□□□ -1.25
TRIM28-210ENST00000597618 NPBWR1P48145 328 aa7.22□□□□□ -1.25
TRIM28-210ENST00000597618 KCTD21Q4G0X4 260 aa7.22□□□□□ -1.25
TRIM28-210ENST00000597618 ZNF600Q6ZNG1 722 aa7.22□□□□□ -1.25
TRIM28-210ENST00000597618 TPRA1Q86W33 373 aa7.22□□□□□ -1.25
TRIM28-210ENST00000597618 TMEM17Q86X19 198 aa7.22□□□□□ -1.25
TRIM28-210ENST00000597618 ZNF114Q8NC26 417 aa7.22□□□□□ -1.25
TRIM28-210ENST00000597618 BEST4Q8NFU0 473 aa7.22□□□□□ -1.25
TRIM28-210ENST00000597618 PINX1Q96BK5 328 aaKnown RBP7.22□□□□□ -1.25
TRIM28-210ENST00000597618 MOB3AQ96BX8 217 aa7.22□□□□□ -1.25
TRIM28-210ENST00000597618 TSC22D3Q99576 134 aa7.22□□□□□ -1.25
TRIM28-210ENST00000597618 MYCBP2O75592 4640 aa7.21□□□□□ -1.25
TRIM28-210ENST00000597618 KRASP01116 189 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 RLN1P04808 185 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 PTHLHP12272 177 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 NPPCP23582 126 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 G6PCP35575 357 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 P2RY1P47900 373 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 EIF2B2P49770 351 aaKnown RBP7.21□□□□□ -1.26
TRIM28-210ENST00000597618 EMP1P54849 157 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 TSPAN14Q8NG11 270 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 DCANP1Q8TF63 244 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 NARS2Q96I59 477 aaKnown RBP7.21□□□□□ -1.26
TRIM28-210ENST00000597618 METTL26Q96S19 204 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 RAB40CQ96S21 281 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 NEU1Q99519 415 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 MGLLQ99685 303 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 XCL2Q9UBD3 114 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 TMED3Q9Y3Q3 217 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 FAT1Q14517 4588 aa7.21□□□□□ -1.26
TRIM28-210ENST00000597618 A0A1B0GU03 582 aa7.2□□□□□ -1.26
TRIM28-210ENST00000597618 HELTA6NFD8 242 aa7.2□□□□□ -1.26
TRIM28-210ENST00000597618 SMIM9A6NGZ8 99 aa7.2□□□□□ -1.26
TRIM28-210ENST00000597618 LPAR6P43657 344 aa7.2□□□□□ -1.26
TRIM28-210ENST00000597618 HERV-K104P61576 105 aa7.2□□□□□ -1.26
TRIM28-210ENST00000597618 PSMG4Q5JS54 123 aa7.2□□□□□ -1.26
TRIM28-210ENST00000597618 ZNF705AQ6ZN79 300 aaPredicted RBP7.2□□□□□ -1.26
TRIM28-210ENST00000597618 HOGA1Q86XE5 327 aa7.2□□□□□ -1.26
TRIM28-210ENST00000597618 C6orf223Q8N319 242 aa7.2□□□□□ -1.26
TRIM28-210ENST00000597618 FCAMRQ8WWV6 532 aa7.2□□□□□ -1.26
TRIM28-210ENST00000597618 NIPSNAP3BQ9BS92 247 aa7.2□□□□□ -1.26
TRIM28-210ENST00000597618 TPRKBQ9Y3C4 175 aa7.2□□□□□ -1.26
TRIM28-210ENST00000597618 NBDYA0A0U1RRE5 68 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 DBX1A6NMT0 343 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 ZNF705FA8MVS1 300 aaPredicted RBP7.19□□□□□ -1.26
TRIM28-210ENST00000597618 RGS10O43665 173 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 SCGB2A1O75556 95 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 ZNF705DP0CH99 300 aaPredicted RBP7.19□□□□□ -1.26
TRIM28-210ENST00000597618 ZNF705BP0CI00 300 aaPredicted RBP7.19□□□□□ -1.26
TRIM28-210ENST00000597618 HTN3P15516 51 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 CRYBB3P26998 211 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 GNRHRP30968 328 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 SNRPD3P62318 126 aaKnown RBP7.19□□□□□ -1.26
TRIM28-210ENST00000597618 PRCDQ00LT1 54 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 DHRS2Q13268 280 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 OXA1LQ15070 435 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 TMEM88Q6PEY1 159 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 C15orf53Q8NAA6 179 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 YTHDF1Q9BYJ9 559 aaKnown RBP7.19□□□□□ -1.26
TRIM28-210ENST00000597618 DKK2Q9UBU2 259 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 DAPK2Q9UIK4 370 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 RFNGQ9Y644 331 aa7.19□□□□□ -1.26
TRIM28-210ENST00000597618 NACAE9PAV3 2078 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms