RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 OPCMLQ14982 345 aa11.52□□□□□ -0.56
VRK3-212ENST00000596814 ARSJQ5FYB0 599 aaPredicted RBP11.52□□□□□ -0.56
VRK3-212ENST00000596814 OR1L6Q8NGR2 347 aa11.52□□□□□ -0.56
VRK3-212ENST00000596814 FAM110DQ8TAY7 271 aaPredicted RBP11.52□□□□□ -0.56
VRK3-212ENST00000596814 ZNF580Q9UK33 172 aa11.52□□□□□ -0.56
VRK3-212ENST00000596814 FAM181BA6NEQ2 426 aa11.52□□□□□ -0.57
VRK3-212ENST00000596814 PRSS46E5RG02 174 aa11.52□□□□□ -0.57
VRK3-212ENST00000596814 CORTO00230 105 aa11.52□□□□□ -0.57
VRK3-212ENST00000596814 TAAR5O14804 337 aa11.52□□□□□ -0.57
VRK3-212ENST00000596814 MFAP2P55001 183 aa11.52□□□□□ -0.57
VRK3-212ENST00000596814 UBA52P62987 128 aaKnown RBP11.52□□□□□ -0.57
VRK3-212ENST00000596814 TMEM95Q3KNT9 176 aa11.52□□□□□ -0.57
VRK3-212ENST00000596814 PVRIGQ6DKI7 326 aa11.52□□□□□ -0.57
VRK3-212ENST00000596814 OR5T1Q8NG75 326 aa11.52□□□□□ -0.57
VRK3-212ENST00000596814 RNASEH2CQ8TDP1 164 aaKnown RBP11.52□□□□□ -0.57
VRK3-212ENST00000596814 LINC00527Q9UJ94 153 aa11.52□□□□□ -0.57
VRK3-212ENST00000596814 CYB5BO43169 146 aa11.51□□□□□ -0.57
VRK3-212ENST00000596814 RPL15P61313 204 aaKnown RBP11.51□□□□□ -0.57
VRK3-212ENST00000596814 C19orf54Q5BKX5 351 aa11.51□□□□□ -0.57
VRK3-212ENST00000596814 SLC25A24Q6NUK1 477 aa11.51□□□□□ -0.57
VRK3-212ENST00000596814 MISP3Q96FF7 219 aa11.51□□□□□ -0.57
VRK3-212ENST00000596814 NOL4LQ96MY1 436 aaPredicted RBP11.51□□□□□ -0.57
VRK3-212ENST00000596814 ATP5SQ99766 215 aa11.51□□□□□ -0.57
VRK3-212ENST00000596814 DMRT1Q9Y5R6 373 aa11.51□□□□□ -0.57
VRK3-212ENST00000596814 MAST4O15021 2626 aa11.5□□□□□ -0.57
VRK3-212ENST00000596814 DFFBO76075 338 aa11.5□□□□□ -0.57
VRK3-212ENST00000596814 PRH1P02810 166 aa11.5□□□□□ -0.57
VRK3-212ENST00000596814 OPRK1P41145 380 aa11.5□□□□□ -0.57
VRK3-212ENST00000596814 DLK1P80370 383 aa11.5□□□□□ -0.57
VRK3-212ENST00000596814 EXOSC2Q13868 293 aaKnown RBP11.5□□□□□ -0.57
VRK3-212ENST00000596814 ATP6V1FQ16864 119 aa11.5□□□□□ -0.57
VRK3-212ENST00000596814 Q8N2B8 174 aa11.5□□□□□ -0.57
VRK3-212ENST00000596814 TMEM147Q9BVK8 224 aa11.5□□□□□ -0.57
VRK3-212ENST00000596814 ZNF471Q9BX82 626 aaPredicted RBP11.5□□□□□ -0.57
VRK3-212ENST00000596814 WFDC1Q9HC57 220 aa11.5□□□□□ -0.57
VRK3-212ENST00000596814 IGLV11-55A0A075B6I3 123 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 TCF21O43680 179 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 CRYBA1P05813 215 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 CD69Q07108 199 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 ZNF266Q14584 549 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 GGACTQ9BVM4 153 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 CYTL1Q9NRR1 136 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 UQCC1Q9NVA1 299 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 BORCS7-ASMTA0A0B4J1R7 106 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 UBE2L5PA0A1B0GUS4 154 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 RPL7L1Q6DKI1 246 aaKnown RBP11.49□□□□□ -0.57
VRK3-212ENST00000596814 SLC16A13Q7RTY0 426 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 SLC51BQ86UW2 128 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 FANCD2OSQ96PS1 177 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 ZNF355PQ9NSJ1 428 aa11.49□□□□□ -0.57
VRK3-212ENST00000596814 RPS10-NUDT3A0A1W2PQS6 291 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 SMCO3A2RU48 225 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 SOX15O60248 233 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 TSPAN9O75954 239 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 JTBO76095 146 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 HIST1H1BP16401 226 aaKnown RBP11.48□□□□□ -0.57
VRK3-212ENST00000596814 PPIFP30405 207 aaKnown RBP11.48□□□□□ -0.57
VRK3-212ENST00000596814 GPX4P36969 197 aaPredicted RBP11.48□□□□□ -0.57
VRK3-212ENST00000596814 VWC2Q2TAL6 325 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 ETFRF1Q6IPR1 90 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 Q6ZSV7 163 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 OR2T6Q8NHC8 308 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 CACNG8Q8WXS5 425 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 SLC35E1Q96K37 410 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 FNDC4Q9H6D8 234 aaPredicted RBP11.48□□□□□ -0.57
VRK3-212ENST00000596814 THYN1Q9P016 225 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 CUBNO60494 3623 aa11.48□□□□□ -0.57
VRK3-212ENST00000596814 FNDC10F2Z333 226 aa11.47□□□□□ -0.57
VRK3-212ENST00000596814 MT-CO2P00403 227 aa11.47□□□□□ -0.57
VRK3-212ENST00000596814 IFNA5P01569 189 aa11.47□□□□□ -0.57
VRK3-212ENST00000596814 CFHR3Q02985 330 aa11.47□□□□□ -0.57
VRK3-212ENST00000596814 GON7Q9BXV9 100 aa11.47□□□□□ -0.57
VRK3-212ENST00000596814 IGHV3-21A0A0B4J1V1 117 aa11.46□□□□□ -0.57
VRK3-212ENST00000596814 H3BUA1 57 aa11.46□□□□□ -0.57
VRK3-212ENST00000596814 I3L2K1 104 aa11.46□□□□□ -0.57
VRK3-212ENST00000596814 OR2J3O76001 311 aa11.46□□□□□ -0.57
VRK3-212ENST00000596814 EIF5AP63241 154 aaKnown RBP11.46□□□□□ -0.57
VRK3-212ENST00000596814 AKR1C1Q04828 323 aa11.46□□□□□ -0.57
VRK3-212ENST00000596814 MLANAQ16655 118 aa11.46□□□□□ -0.57
VRK3-212ENST00000596814 KLK9Q2XQG4 91 aa11.46□□□□□ -0.57
VRK3-212ENST00000596814 UBAC2Q8NBM4 344 aa11.46□□□□□ -0.57
VRK3-212ENST00000596814 STOML3Q8TAV4 291 aa11.46□□□□□ -0.57
VRK3-212ENST00000596814 KLK9Q9UKQ9 250 aa11.46□□□□□ -0.57
VRK3-212ENST00000596814 TRBV9A0A0B4J1U6 114 aa11.46□□□□□ -0.58
VRK3-212ENST00000596814 K7EIM0 57 aa11.46□□□□□ -0.58
VRK3-212ENST00000596814 IGHV3-48P01763 117 aa11.46□□□□□ -0.58
VRK3-212ENST00000596814 TPT1P13693 172 aaKnown RBP11.46□□□□□ -0.58
VRK3-212ENST00000596814 RHOGP84095 191 aa11.46□□□□□ -0.58
VRK3-212ENST00000596814 ST8SIA2Q92186 375 aa11.46□□□□□ -0.58
VRK3-212ENST00000596814 NPVFQ9HCQ7 196 aa11.46□□□□□ -0.58
VRK3-212ENST00000596814 FBXL7Q9UJT9 491 aa11.46□□□□□ -0.58
VRK3-212ENST00000596814 SLC35B1P78383 322 aa11.45□□□□□ -0.58
VRK3-212ENST00000596814 DEFA5Q01523 94 aa11.45□□□□□ -0.58
VRK3-212ENST00000596814 GAMTQ14353 236 aa11.45□□□□□ -0.58
VRK3-212ENST00000596814 TREML4Q6UXN2 200 aa11.45□□□□□ -0.58
VRK3-212ENST00000596814 HSD17B11Q8NBQ5 300 aa11.45□□□□□ -0.58
VRK3-212ENST00000596814 SCGB1C1Q8TD33 95 aa11.45□□□□□ -0.58
VRK3-212ENST00000596814 TAF15Q92804 592 aaKnown RBP eCLIP11.45□□□□□ -0.58
VRK3-212ENST00000596814 ACY3Q96HD9 319 aa11.45□□□□□ -0.58
VRK3-212ENST00000596814 MS4A10Q96PG2 267 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms