RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 UNQ9165/PRO28630Q6UXU0 137 aa12.26□□□□□ -0.45
TRIM28-206ENST00000595974 SELENOHQ8IZQ5 122 aaKnown RBP12.26□□□□□ -0.45
TRIM28-206ENST00000595974 TMEM190Q8WZ59 177 aa12.26□□□□□ -0.45
TRIM28-206ENST00000595974 MARC2Q969Z3 335 aa12.26□□□□□ -0.45
TRIM28-206ENST00000595974 NDUFA13Q9P0J0 144 aa12.26□□□□□ -0.45
TRIM28-206ENST00000595974 UFC1Q9Y3C8 167 aa12.26□□□□□ -0.45
TRIM28-206ENST00000595974 TMEM56-RWDD3S4R434 201 aa12.26□□□□□ -0.45
TRIM28-206ENST00000595974 IGHV3-35A0A0C4DH35 117 aa12.25□□□□□ -0.45
TRIM28-206ENST00000595974 A8MZ25 164 aa12.25□□□□□ -0.45
TRIM28-206ENST00000595974 I3L2K1 104 aa12.25□□□□□ -0.45
TRIM28-206ENST00000595974 IGHV4-30-4P0DP06 118 aa12.25□□□□□ -0.45
TRIM28-206ENST00000595974 TMEM187Q14656 261 aa12.25□□□□□ -0.45
TRIM28-206ENST00000595974 UBAC2Q8NBM4 344 aa12.25□□□□□ -0.45
TRIM28-206ENST00000595974 OR52E5Q8NH55 327 aa12.25□□□□□ -0.45
TRIM28-206ENST00000595974 CACNG8Q8WXS5 425 aa12.25□□□□□ -0.45
TRIM28-206ENST00000595974 TXN2Q99757 166 aa12.25□□□□□ -0.45
TRIM28-206ENST00000595974 SRRQ9GZT4 340 aa12.25□□□□□ -0.45
TRIM28-206ENST00000595974 ENY2Q9NPA8 101 aa12.25□□□□□ -0.45
TRIM28-206ENST00000595974 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.25□□□□□ -0.45
TRIM28-206ENST00000595974 CORTO00230 105 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 NDUFA4O00483 81 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 MT-CO2P00403 227 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 ANXA3P12429 323 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 AKR1C4P17516 323 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 SUB1P53999 127 aaKnown RBP eCLIP12.24□□□□□ -0.453e-15■□□□□ 11.1
TRIM28-206ENST00000595974 MFAP4P55083 255 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 SPCS3P61009 180 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 SRPXP78539 464 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 Q6ZRM9 215 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 UXS1Q8NBZ7 420 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 ASCL2Q99929 193 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 SLC25A21Q9BQT8 299 aaPredicted RBP12.24□□□□□ -0.45
TRIM28-206ENST00000595974 CHRDL1Q9BU40 450 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 CACNG5Q9UF02 275 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 CACFD1Q9UGQ2 172 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 STAB2Q8WWQ8 2551 aa12.24□□□□□ -0.45
TRIM28-206ENST00000595974 PIGBOS1A0A0B4J2F0 54 aa12.23□□□□□ -0.45
TRIM28-206ENST00000595974 NUPL2O15504 423 aaKnown RBP12.23□□□□□ -0.45
TRIM28-206ENST00000595974 C8orf88P0DMB2 117 aa12.23□□□□□ -0.45
TRIM28-206ENST00000595974 RNASE2P10153 161 aaKnown RBP12.23□□□□□ -0.45
TRIM28-206ENST00000595974 ADMP35318 185 aa12.23□□□□□ -0.45
TRIM28-206ENST00000595974 SUPT4H1P63272 117 aaKnown RBP12.23□□□□□ -0.45
TRIM28-206ENST00000595974 RELQ04864 619 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-206ENST00000595974 TM4SF20Q53R12 229 aa12.23□□□□□ -0.45
TRIM28-206ENST00000595974 ZNF57Q68EA5 555 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-206ENST00000595974 PVRIGQ6DKI7 326 aa12.23□□□□□ -0.45
TRIM28-206ENST00000595974 PINX1Q96BK5 328 aaKnown RBP12.23□□□□□ -0.45
TRIM28-206ENST00000595974 GPR146Q96CH1 333 aa12.23□□□□□ -0.45
TRIM28-206ENST00000595974 DAZ1Q9NQZ3 744 aaKnown RBP12.23□□□□□ -0.45
TRIM28-206ENST00000595974 C19orf73Q9NVV2 129 aa12.23□□□□□ -0.45
TRIM28-206ENST00000595974 MRPL27Q9P0M9 148 aaKnown RBP12.23□□□□□ -0.45
TRIM28-206ENST00000595974 MLXQ9UH92 298 aa12.23□□□□□ -0.45
TRIM28-206ENST00000595974 U3KQK5 164 aa12.23□□□□□ -0.45
TRIM28-206ENST00000595974 A0A0B4J2A0 478 aa12.22□□□□□ -0.45
TRIM28-206ENST00000595974 ZNF785A8K8V0 405 aa12.22□□□□□ -0.45
TRIM28-206ENST00000595974 CTSGP08311 255 aa12.22□□□□□ -0.45
TRIM28-206ENST00000595974 CD81P60033 236 aa12.22□□□□□ -0.45
TRIM28-206ENST00000595974 BSXQ3C1V8 233 aa12.22□□□□□ -0.45
TRIM28-206ENST00000595974 TRIQKQ629K1 86 aa12.22□□□□□ -0.45
TRIM28-206ENST00000595974 BTNL8Q6UX41 500 aa12.22□□□□□ -0.45
TRIM28-206ENST00000595974 SBSPONQ8IVN8 264 aa12.22□□□□□ -0.45
TRIM28-206ENST00000595974 TMEM61Q8N0U2 210 aa12.22□□□□□ -0.45
TRIM28-206ENST00000595974 SHPKQ9UHJ6 478 aa12.22□□□□□ -0.45
TRIM28-206ENST00000595974 GNG7O60262 68 aa12.21□□□□□ -0.45
TRIM28-206ENST00000595974 SULT1A3P0DMM9 295 aa12.21□□□□□ -0.45
TRIM28-206ENST00000595974 SULT1A4P0DMN0 295 aa12.21□□□□□ -0.45
TRIM28-206ENST00000595974 NPBWR1P48145 328 aa12.21□□□□□ -0.45
TRIM28-206ENST00000595974 INPP1P49441 399 aa12.21□□□□□ -0.45
TRIM28-206ENST00000595974 GUCA2BQ16661 112 aa12.21□□□□□ -0.45
TRIM28-206ENST00000595974 TMEM128Q5BJH2 165 aa12.21□□□□□ -0.45
TRIM28-206ENST00000595974 NMSQ5H8A3 153 aa12.21□□□□□ -0.45
TRIM28-206ENST00000595974 TMED4Q7Z7H5 227 aa12.21□□□□□ -0.45
TRIM28-206ENST00000595974 LGI3Q8N145 548 aa12.21□□□□□ -0.45
TRIM28-206ENST00000595974 WDR89Q96FK6 387 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-206ENST00000595974 NEURL2Q9BR09 285 aa12.21□□□□□ -0.45
TRIM28-206ENST00000595974 PRR13Q9NZ81 148 aa12.21□□□□□ -0.45
TRIM28-206ENST00000595974 HUWE1Q7Z6Z7 4374 aaKnown RBP12.21□□□□□ -0.46
TRIM28-206ENST00000595974 TRAV25A0A0B4J276 109 aa12.2□□□□□ -0.46
TRIM28-206ENST00000595974 DUXBA0A1W2PPF3 345 aa12.2□□□□□ -0.46
TRIM28-206ENST00000595974 C15orf62A8K5M9 175 aa12.2□□□□□ -0.46
TRIM28-206ENST00000595974 K7EMT4 169 aa12.2□□□□□ -0.46
TRIM28-206ENST00000595974 HTR2BP41595 481 aa12.2□□□□□ -0.46
TRIM28-206ENST00000595974 RBMS2Q15434 407 aaKnown RBP12.2□□□□□ -0.46
TRIM28-206ENST00000595974 DUSP18Q8NEJ0 188 aa12.2□□□□□ -0.46
TRIM28-206ENST00000595974 WWC2-AS2Q96NR7 200 aa12.2□□□□□ -0.46
TRIM28-206ENST00000595974 C20orf24Q9BUV8 137 aa12.2□□□□□ -0.46
TRIM28-206ENST00000595974 NAP1L6A6NFF2 107 aa12.19□□□□□ -0.46
TRIM28-206ENST00000595974 CEBPZOSA8MTT3 80 aa12.19□□□□□ -0.46
TRIM28-206ENST00000595974 IGHV3-48P01763 117 aa12.19□□□□□ -0.46
TRIM28-206ENST00000595974 CCR6P51684 374 aa12.19□□□□□ -0.46
TRIM28-206ENST00000595974 SMCO1Q147U7 214 aa12.19□□□□□ -0.46
TRIM28-206ENST00000595974 BAK1Q16611 211 aa12.19□□□□□ -0.46
TRIM28-206ENST00000595974 SLC16A13Q7RTY0 426 aa12.19□□□□□ -0.46
TRIM28-206ENST00000595974 TUBA4BQ9H853 241 aa12.19□□□□□ -0.46
TRIM28-206ENST00000595974 ZMAT4Q9H898 229 aa12.19□□□□□ -0.46
TRIM28-206ENST00000595974 HEYLQ9NQ87 328 aaPredicted RBP12.19□□□□□ -0.46
TRIM28-206ENST00000595974 CD7P09564 240 aa12.18□□□□□ -0.46
TRIM28-206ENST00000595974 VAMP1P23763 118 aa12.18□□□□□ -0.46
TRIM28-206ENST00000595974 OPRK1P41145 380 aa12.18□□□□□ -0.46
TRIM28-206ENST00000595974 ANKRD55Q3KP44 614 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 139.8 ms