RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 MIFP14174 115 aa0.57□□□□□ -2.32
SS18-214ENST00000580003 RPS12P25398 132 aaKnown RBP0.57□□□□□ -2.32
SS18-214ENST00000580003 MRPL30Q8TCC3 161 aaKnown RBP0.57□□□□□ -2.32
SS18-214ENST00000580003 RAB8BQ92930 207 aa0.57□□□□□ -2.32
SS18-214ENST00000580003 RIC1Q4ADV7 1423 aa0.56□□□□□ -2.32
SS18-214ENST00000580003 TRBV6-8A0A0A6YYG3 113 aa0.56□□□□□ -2.32
SS18-214ENST00000580003 KHDC3LQ587J8 217 aa0.56□□□□□ -2.32
SS18-214ENST00000580003 CLVS1Q8IUQ0 354 aaPredicted RBP0.56□□□□□ -2.32
SS18-214ENST00000580003 DRC3Q9H069 523 aa0.56□□□□□ -2.32
SS18-214ENST00000580003 MIXL1Q9H2W2 232 aa0.56□□□□□ -2.32
SS18-214ENST00000580003 EML6Q6ZMW3 1958 aa0.56□□□□□ -2.32
SS18-214ENST00000580003 H0Y980 276 aa0.55□□□□□ -2.32
SS18-214ENST00000580003 IGKV1-5P01602 117 aa0.55□□□□□ -2.32
SS18-214ENST00000580003 BAALC-AS2P0C853 105 aa0.55□□□□□ -2.32
SS18-214ENST00000580003 RHOGP84095 191 aa0.55□□□□□ -2.32
SS18-214ENST00000580003 MIR17HGQ75NE6 70 aa0.55□□□□□ -2.32
SS18-214ENST00000580003 TMEM156Q8N614 296 aa0.55□□□□□ -2.32
SS18-214ENST00000580003 OPTNQ96CV9 577 aa0.55□□□□□ -2.32
SS18-214ENST00000580003 INE1O15225 51 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 SLC16A4O15374 487 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 UBL3O95164 117 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 COX6A1P12074 109 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 SSR2P43308 183 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 HBA1P69905 142 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 RHEBQ15382 184 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 OR5A1Q8NGJ0 315 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 OR13C4Q8NGS5 318 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 DNAJC9Q8WXX5 260 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 EVC2Q86UK5 1308 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 PIK3R4Q99570 1358 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 TOPBP1Q92547 1522 aa0.54□□□□□ -2.32
SS18-214ENST00000580003 KMT2DO14686 5537 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 LRRN3E7EW58 273 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 M0QX08 132 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 KCNK1O00180 336 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 TMED1Q13445 227 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 SFXN4Q6P4A7 337 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 FAM151BQ6UXP7 276 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 LRRC25Q8N386 305 aaPredicted RBP0.53□□□□□ -2.32
SS18-214ENST00000580003 SFT2D1Q8WV19 159 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 KLK6Q92876 244 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 BORCS5Q969J3 196 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 OR51I1Q9H343 314 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 RASL12Q9NYN1 266 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 TAS2R4Q9NYW5 299 aa0.53□□□□□ -2.32
SS18-214ENST00000580003 ADGRB2O60241 1585 aa0.53□□□□□ -2.33
SS18-214ENST00000580003 RAB5BP61020 215 aa0.52□□□□□ -2.33
SS18-214ENST00000580003 CNBPP62633 177 aaKnown RBP0.52□□□□□ -2.33
SS18-214ENST00000580003 PMAIP1Q13794 54 aa0.52□□□□□ -2.33
SS18-214ENST00000580003 RNASE10Q5GAN6 216 aaKnown RBP0.52□□□□□ -2.33
SS18-214ENST00000580003 A0A1W2PPM0 123 aa0.51□□□□□ -2.33
SS18-214ENST00000580003 NCR3O14931 201 aa0.51□□□□□ -2.33
SS18-214ENST00000580003 LPCAT4Q643R3 524 aa0.51□□□□□ -2.33
SS18-214ENST00000580003 IMP4Q96G21 291 aaKnown RBP0.51□□□□□ -2.33
SS18-214ENST00000580003 LSM5Q9Y4Y9 91 aaKnown RBP0.51□□□□□ -2.33
SS18-214ENST00000580003 TNRC6AQ8NDV7 1962 aaKnown RBP0.5□□□□□ -2.33
SS18-214ENST00000580003 DEXIO95424 95 aa0.5□□□□□ -2.33
SS18-214ENST00000580003 TCL1BO95988 128 aa0.5□□□□□ -2.33
SS18-214ENST00000580003 OR51D1Q8NGF3 324 aa0.5□□□□□ -2.33
SS18-214ENST00000580003 TERB2Q8NHR7 220 aa0.5□□□□□ -2.33
SS18-214ENST00000580003 TMEM70Q9BUB7 260 aa0.5□□□□□ -2.33
SS18-214ENST00000580003 USE1Q9NZ43 259 aa0.5□□□□□ -2.33
SS18-214ENST00000580003 TP73-AS1Q9UF72 201 aa0.5□□□□□ -2.33
SS18-214ENST00000580003 PQLC2LA1A4F0 135 aa0.49□□□□□ -2.33
SS18-214ENST00000580003 SULT1B1O43704 296 aa0.49□□□□□ -2.33
SS18-214ENST00000580003 OR2B3O76000 313 aa0.49□□□□□ -2.33
SS18-214ENST00000580003 MGST1P10620 155 aaKnown RBP0.49□□□□□ -2.33
SS18-214ENST00000580003 ZNF25P17030 456 aaPredicted RBP0.49□□□□□ -2.33
SS18-214ENST00000580003 CDC42SE1Q9NRR8 79 aa0.49□□□□□ -2.33
SS18-214ENST00000580003 SLC39A9Q9NUM3 307 aa0.49□□□□□ -2.33
SS18-214ENST00000580003 ZFC3H1O60293 1989 aaKnown RBP0.48□□□□□ -2.33
SS18-214ENST00000580003 TRAV12-1A0A0B4J245 112 aa0.48□□□□□ -2.33
SS18-214ENST00000580003 OR5G3P0C626 314 aa0.48□□□□□ -2.33
SS18-214ENST00000580003 AP2S1P53680 142 aaPredicted RBP0.48□□□□□ -2.33
SS18-214ENST00000580003 TCL1AP56279 114 aa0.48□□□□□ -2.33
SS18-214ENST00000580003 MPV17LQ2QL34 196 aa0.48□□□□□ -2.33
SS18-214ENST00000580003 PDPK2PQ6A1A2 396 aa0.48□□□□□ -2.33
SS18-214ENST00000580003 SIGLECL1Q8N7X8 197 aa0.48□□□□□ -2.33
SS18-214ENST00000580003 PATE1Q8WXA2 126 aa0.48□□□□□ -2.33
SS18-214ENST00000580003 COMMD5Q9GZQ3 224 aa0.48□□□□□ -2.33
SS18-214ENST00000580003 XPNPEP1Q9NQW7 623 aa0.48□□□□□ -2.33
SS18-214ENST00000580003 FBXL12Q9NXK8 326 aa0.48□□□□□ -2.33
SS18-214ENST00000580003 KIF13BQ9NQT8 1826 aa0.48□□□□□ -2.33
SS18-214ENST00000580003 EEF1E1-BLOC1S5C9J1V9 151 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 LYZL6O75951 148 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 PROSCO94903 275 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 IFNA10P01566 189 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 MAGEA2P43356 314 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 HIST2H3PS2Q5TEC6 136 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 LPCAT3Q6P1A2 487 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 CD200R1LQ6Q8B3 271 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 SOSTDC1Q6X4U4 206 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 HIST3H2BBQ8N257 126 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 PRTFDC1Q9NRG1 225 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 CMTM6Q9NX76 183 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 CNTRLQ7Z7A1 2325 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 PEAK1Q9H792 1746 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 C9orf84Q5VXU9 1444 aa0.47□□□□□ -2.33
SS18-214ENST00000580003 ISG15P05161 165 aa0.46□□□□□ -2.34
SS18-214ENST00000580003 SRSF6Q13247 344 aaKnown RBP0.46□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms