RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 RHPN1-AS1Q9BWJ2 59 aa10.16□□□□□ -0.78
CCDC40-216ENST00000576241 NXF2Q9GZY0 626 aaKnown RBP10.16□□□□□ -0.78
CCDC40-216ENST00000576241 A0A0J9YWU9 116 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 CHEK1O14757 476 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 IGHV3-48P01763 117 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 RPL35AP18077 110 aaKnown RBP10.15□□□□□ -0.78
CCDC40-216ENST00000576241 PI3P19957 117 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 TBPP20226 339 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 SNCAP37840 140 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 CMC4P56277 68 aaPredicted RBP10.15□□□□□ -0.78
CCDC40-216ENST00000576241 PIGPP57054 158 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 PMS2P11Q13670 270 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 LYG2Q86SG7 212 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 ARRDC1Q8N5I2 433 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 SLC35G3Q8N808 338 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 GATAD1Q8WUU5 269 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 GALNT14Q96FL9 552 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 OR10C1Q96KK4 312 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 RNF2Q99496 336 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 GINS3Q9BRX5 216 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 PDCD10Q9BUL8 212 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 KLK11Q9UBX7 282 aa10.15□□□□□ -0.78
CCDC40-216ENST00000576241 ABCA13Q86UQ4 5058 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 IGHV3-49A0A0A0MS15 119 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 TRAV14DV4A0A0A6YYC5 116 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 NUPR2A6NF83 97 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 IFNA17P01571 189 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 CD3DP04234 171 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 NPBWR1P48145 328 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 TFPI2P48307 235 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 TNFRSF9Q07011 255 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 SPINK9Q5DT21 86 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 OR52I2Q8NH67 350 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 C15orf40Q8WUR7 153 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 TP53RKQ96S44 253 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 EXTL2Q9UBQ6 330 aa10.14□□□□□ -0.79
CCDC40-216ENST00000576241 IGKV3-7A0A075B6H7 116 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 C3orf85A0A1B0GTC6 90 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 GABARAPO95166 117 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 CD5P06127 495 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 ZNF182P17025 639 aaPredicted RBP10.13□□□□□ -0.79
CCDC40-216ENST00000576241 PPP5CP53041 499 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 PAFAH1B2P68402 229 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 IZUMO4Q1ZYL8 232 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 TRIM16LQ309B1 348 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 LHFPL1Q86WI0 220 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 APRG1Q8IVJ8 170 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 TMEM217Q8N7C4 229 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 CCDC71LQ8N9Z2 235 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 DUSP18Q8NEJ0 188 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 RNASE11Q8TAA1 199 aaKnown RBP10.13□□□□□ -0.79
CCDC40-216ENST00000576241 ZFAND1Q8TCF1 268 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 RNF183Q96D59 192 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 MAP6D1Q9H9H5 199 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 COPZ2Q9P299 210 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 MTFP1Q9UDX5 166 aa10.13□□□□□ -0.79
CCDC40-216ENST00000576241 IGHV3OR16-13A0A075B7E8 117 aa10.12□□□□□ -0.79
CCDC40-216ENST00000576241 IGHV3-74A0A0B4J1X5 117 aa10.12□□□□□ -0.79
CCDC40-216ENST00000576241 CORTO00230 105 aa10.12□□□□□ -0.79
CCDC40-216ENST00000576241 IGKV1-5P01602 117 aa10.12□□□□□ -0.79
CCDC40-216ENST00000576241 HOXA1P49639 335 aaPredicted RBP10.12□□□□□ -0.79
CCDC40-216ENST00000576241 SUB1P53999 127 aaKnown RBP eCLIP10.12□□□□□ -0.79
CCDC40-216ENST00000576241 CTF1Q16619 201 aa10.12□□□□□ -0.79
CCDC40-216ENST00000576241 SCGB2B2Q4G0G5 96 aa10.12□□□□□ -0.79
CCDC40-216ENST00000576241 RRNAD1Q96FB5 475 aaKnown RBP10.12□□□□□ -0.79
CCDC40-216ENST00000576241 NAA50Q9GZZ1 169 aaKnown RBP10.12□□□□□ -0.79
CCDC40-216ENST00000576241 ENY2Q9NPA8 101 aa10.12□□□□□ -0.79
CCDC40-216ENST00000576241 A0A0B4J293 547 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 INS-IGF2F8WCM5 200 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 ST8SIA3O43173 380 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 SCGB2A1O75556 95 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 B3GALNT1O75752 331 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 ATF4P18848 351 aaPredicted RBP10.11□□□□□ -0.79
CCDC40-216ENST00000576241 TAS2R19P59542 299 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 GPR107Q5VW38 600 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 TOMM20LQ6UXN7 152 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 ZNF600Q6ZNG1 722 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 TCF24Q7RTU0 167 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 GBGT1Q8N5D6 347 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 TMEM229BQ8NBD8 167 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 TERB2Q8NHR7 220 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 LINC00476Q8WZB0 136 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 ZNF414Q96IQ9 312 aa10.11□□□□□ -0.79
CCDC40-216ENST00000576241 MPTX1A8MV57 137 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 DNASE2O00115 360 aaPredicted RBP10.1□□□□□ -0.79
CCDC40-216ENST00000576241 RGS5O15539 181 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 RAB3DO95716 219 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 P0C879 139 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 RPL11P62913 178 aaKnown RBP10.1□□□□□ -0.79
CCDC40-216ENST00000576241 EWSR1Q01844 656 aaKnown RBP eCLIP10.1□□□□□ -0.79
CCDC40-216ENST00000576241 SP6Q3SY56 376 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 FAM90A2PQ658T7 463 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 STEAP1BQ6NZ63 245 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 CEMP1Q6PRD7 247 aaPredicted RBP10.1□□□□□ -0.79
CCDC40-216ENST00000576241 OR4D10Q8NGI6 311 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 OR13C8Q8NGS7 320 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 ABHD1Q96SE0 405 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 CSTL1Q9H114 145 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 TMEM231Q9H6L2 316 aa10.1□□□□□ -0.79
CCDC40-216ENST00000576241 KLK5Q9Y337 293 aaPredicted RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms