RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 UBE2UQ5VVX9 321 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 THOC7Q6I9Y2 204 aaKnown RBP4.12□□□□□ -1.75
VPS53-208ENST00000570650 HSD17B13Q7Z5P4 300 aaPredicted RBP4.12□□□□□ -1.75
VPS53-208ENST00000570650 LYPD1Q8N2G4 141 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 C15orf53Q8NAA6 179 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 CCDC197Q8NCU1 140 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 OR10W1Q8NGF6 305 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 OR56B1Q8NGI3 324 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 MAFIPQ8WZ33 124 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 GRAMD2BQ96HH9 432 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 GINS3Q9BRX5 216 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 NIPSNAP3BQ9BS92 247 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 QTRT1Q9BXR0 403 aaKnown RBP4.12□□□□□ -1.75
VPS53-208ENST00000570650 COMMD5Q9GZQ3 224 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 VSIRQ9H7M9 311 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 RABAC1Q9UI14 185 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 KCNK7Q9Y2U2 307 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 DNAH5Q8TE73 4624 aa4.12□□□□□ -1.75
VPS53-208ENST00000570650 A0A087WWL8 130 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 K7EIM0 57 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 UPK2O00526 184 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 SLC17A2O00624 439 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 WBP4O75554 376 aaKnown RBP4.11□□□□□ -1.75
VPS53-208ENST00000570650 HLA-DQB1P01920 261 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 HTN3P15516 51 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 GNB3P16520 340 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 EMP1P54849 157 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 BRWD1-AS2P59051 145 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 EIF4EBP1Q13541 118 aaPredicted RBP4.11□□□□□ -1.75
VPS53-208ENST00000570650 INSL4Q14641 139 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 ACSM3Q53FZ2 586 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 HSD17B12Q53GQ0 312 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 ACTL10Q5JWF8 245 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 C1orf146Q5VVC0 180 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 TMEM88Q6PEY1 159 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 ZNF773Q6PK81 442 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 Q6ZS49 121 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 ZNRF2Q8NHG8 242 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 RAB3CQ96E17 227 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 TMEM80Q96HE8 168 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 C1QTNF4Q9BXJ3 329 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 TMEM231Q9H6L2 316 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 PLGRKTQ9HBL7 147 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 TAS2R8Q9NYW2 309 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 SPATA2Q9UM82 520 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 OR2W1Q9Y3N9 320 aa4.11□□□□□ -1.75
VPS53-208ENST00000570650 F11RQ9Y624 299 aaKnown RBP4.11□□□□□ -1.75
VPS53-208ENST00000570650 IGKV1D-8A0A087WSZ0 117 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 TRAV3A0A0B4J244 114 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 IGKV1D-13A0A0B4J2D9 117 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 IGHV3-66A0A0C4DH42 116 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 EFCAB10A6NFE3 127 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 ERICH4A6NGS2 130 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 SMIM9A6NGZ8 99 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 K7EQG2 157 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 DENRO43583 198 aaKnown RBP4.1□□□□□ -1.75
VPS53-208ENST00000570650 NXPH3O95157 252 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 APOHP02749 345 aaPredicted RBP4.1□□□□□ -1.75
VPS53-208ENST00000570650 FGF2P09038 288 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 CTXN2P0C2S0 81 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 ZNF688P0C7X2 276 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 TRAPPC2P0DI81 140 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 TRAPPC2BP0DI82 140 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 IGKV1-13P0DP09 117 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 BTF3P20290 206 aaKnown RBP4.1□□□□□ -1.75
VPS53-208ENST00000570650 NFYAP23511 347 aaPredicted RBP4.1□□□□□ -1.75
VPS53-208ENST00000570650 FGF9P31371 208 aaPredicted RBP4.1□□□□□ -1.75
VPS53-208ENST00000570650 TALDO1P37837 337 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 MFAP4P55083 255 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 TAS2R31P59538 309 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 NUTF2P61970 127 aaKnown RBP4.1□□□□□ -1.75
VPS53-208ENST00000570650 WT1-ASQ06250 92 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 OXA1LQ15070 435 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 POU2AF1Q16633 256 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 FAM222AQ5U5X8 452 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 CBR4Q8N4T8 237 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 MS4A15Q8N5U1 240 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 STXBP6Q8NFX7 210 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 LSM10Q969L4 123 aaKnown RBP4.1□□□□□ -1.75
VPS53-208ENST00000570650 TXN2Q99757 166 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 NXF2Q9GZY0 626 aaKnown RBP4.1□□□□□ -1.75
VPS53-208ENST00000570650 PTTG2Q9NZH5 202 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 XCL2Q9UBD3 114 aa4.1□□□□□ -1.75
VPS53-208ENST00000570650 A0A1W2PS18 150 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 ZNF705FA8MVS1 300 aaPredicted RBP4.09□□□□□ -1.75
VPS53-208ENST00000570650 H0YIZ8 118 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 MFNGO00587 321 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 MYL12BO14950 172 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 RBFOX2O43251 390 aaKnown RBP eCLIP4.09□□□□□ -1.758e-7■■□□□ 13.4
VPS53-208ENST00000570650 HPRT1P00492 218 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 HNRNPCP07910 306 aaKnown RBP eCLIP4.09□□□□□ -1.75
VPS53-208ENST00000570650 ZNF705DP0CH99 300 aaPredicted RBP4.09□□□□□ -1.75
VPS53-208ENST00000570650 ZNF705BP0CI00 300 aaPredicted RBP4.09□□□□□ -1.75
VPS53-208ENST00000570650 NQO2P16083 231 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 HIST1H1DP16402 221 aaKnown RBP4.09□□□□□ -1.75
VPS53-208ENST00000570650 GADD45AP24522 165 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 RANBP1P43487 201 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 CCL18P55774 89 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 XGP55808 180 aa4.09□□□□□ -1.75
VPS53-208ENST00000570650 WNT4P56705 351 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms