RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ALDH3B2P48448 385 aa12.63□□□□□ -0.39
CLK3-227ENST00000570296 DAD1P61803 113 aa12.63□□□□□ -0.39
CLK3-227ENST00000570296 KCTD21Q4G0X4 260 aa12.63□□□□□ -0.39
CLK3-227ENST00000570296 SPAG16Q8N0X2 631 aa12.63□□□□□ -0.39
CLK3-227ENST00000570296 BPIFB6Q8NFQ5 453 aa12.63□□□□□ -0.39
CLK3-227ENST00000570296 NDUFA4L2Q9NRX3 87 aa12.63□□□□□ -0.39
CLK3-227ENST00000570296 TMEM140Q9NV12 185 aa12.63□□□□□ -0.39
CLK3-227ENST00000570296 MFNGO00587 321 aa12.62□□□□□ -0.39
CLK3-227ENST00000570296 DENRO43583 198 aaKnown RBP12.62□□□□□ -0.39
CLK3-227ENST00000570296 TALDO1P37837 337 aa12.62□□□□□ -0.39
CLK3-227ENST00000570296 RAB11BQ15907 218 aa12.62□□□□□ -0.39
CLK3-227ENST00000570296 HSD17B12Q53GQ0 312 aa12.62□□□□□ -0.39
CLK3-227ENST00000570296 MS4A15Q8N5U1 240 aa12.62□□□□□ -0.39
CLK3-227ENST00000570296 OR1P1Q8NH06 330 aa12.62□□□□□ -0.39
CLK3-227ENST00000570296 SLC25A46Q96AG3 418 aa12.62□□□□□ -0.39
CLK3-227ENST00000570296 Q9H3A6 140 aa12.62□□□□□ -0.39
CLK3-227ENST00000570296 ZFAND3Q9H8U3 227 aa12.62□□□□□ -0.39
CLK3-227ENST00000570296 Q9H8V8 135 aa12.62□□□□□ -0.39
CLK3-227ENST00000570296 PLA2G2DQ9UNK4 145 aa12.62□□□□□ -0.39
CLK3-227ENST00000570296 RNF213Q63HN8 5207 aa12.61□□□□□ -0.39
CLK3-227ENST00000570296 A0A1W2PPQ1 181 aa12.61□□□□□ -0.39
CLK3-227ENST00000570296 I3L2K1 104 aa12.61□□□□□ -0.39
CLK3-227ENST00000570296 GNG7O60262 68 aa12.61□□□□□ -0.39
CLK3-227ENST00000570296 HPRT1P00492 218 aa12.61□□□□□ -0.39
CLK3-227ENST00000570296 ICAM4Q14773 271 aa12.61□□□□□ -0.39
CLK3-227ENST00000570296 PSMG4Q5JS54 123 aa12.61□□□□□ -0.39
CLK3-227ENST00000570296 GPHA2Q96T91 129 aa12.61□□□□□ -0.39
CLK3-227ENST00000570296 PLCXD1Q9NUJ7 323 aa12.61□□□□□ -0.39
CLK3-227ENST00000570296 TPRKBQ9Y3C4 175 aa12.61□□□□□ -0.39
CLK3-227ENST00000570296 YTHDF2Q9Y5A9 579 aaKnown RBP12.61□□□□□ -0.39
CLK3-227ENST00000570296 RPS10-NUDT3A0A1W2PQS6 291 aa12.6□□□□□ -0.39
CLK3-227ENST00000570296 HELTA6NFD8 242 aa12.6□□□□□ -0.39
CLK3-227ENST00000570296 H3BMM0 161 aa12.6□□□□□ -0.39
CLK3-227ENST00000570296 NUDT3O95989 172 aa12.6□□□□□ -0.39
CLK3-227ENST00000570296 GADD45AP24522 165 aa12.6□□□□□ -0.39
CLK3-227ENST00000570296 DLK1P80370 383 aa12.6□□□□□ -0.39
CLK3-227ENST00000570296 DMBX1Q8NFW5 382 aa12.6□□□□□ -0.39
CLK3-227ENST00000570296 FAM3DQ96BQ1 224 aa12.6□□□□□ -0.39
CLK3-227ENST00000570296 GFI1Q99684 422 aa12.6□□□□□ -0.39
CLK3-227ENST00000570296 HINT2Q9BX68 163 aa12.6□□□□□ -0.39
CLK3-227ENST00000570296 BLOC1S6Q9UL45 172 aa12.6□□□□□ -0.39
CLK3-227ENST00000570296 IGHV3OR16-12A0A075B7B8 117 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 PTGES3LE9PB15 166 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 HIST1H1DP16402 221 aaKnown RBP12.59□□□□□ -0.39
CLK3-227ENST00000570296 NPPCP23582 126 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 DTYMKP23919 212 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 RANBP1P43487 201 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 P2RY1P47900 373 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 WNT4P56705 351 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 ST3GAL4Q11206 333 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 MSMO1Q15800 293 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 USF2Q15853 346 aaPredicted RBP12.59□□□□□ -0.39
CLK3-227ENST00000570296 ZNF600Q6ZNG1 722 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 AHSA2Q719I0 299 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 OR10R2Q8NGX6 335 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 PSORS1C1Q9UIG5 152 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 RAB22AQ9UL26 194 aa12.59□□□□□ -0.39
CLK3-227ENST00000570296 A0A075B6Q4 140 aa12.58□□□□□ -0.4
CLK3-227ENST00000570296 EREGO14944 169 aa12.58□□□□□ -0.4
CLK3-227ENST00000570296 UCHL1P09936 223 aa12.58□□□□□ -0.4
CLK3-227ENST00000570296 DHRS2Q13268 280 aa12.58□□□□□ -0.4
CLK3-227ENST00000570296 C2orf76Q3KRA6 126 aa12.58□□□□□ -0.4
CLK3-227ENST00000570296 LAIR2Q6ISS4 152 aa12.58□□□□□ -0.4
CLK3-227ENST00000570296 SSX7Q7RTT5 188 aa12.58□□□□□ -0.4
CLK3-227ENST00000570296 MISP3Q96FF7 219 aa12.58□□□□□ -0.4
CLK3-227ENST00000570296 PLEKHA2Q9HB19 425 aa12.58□□□□□ -0.4
CLK3-227ENST00000570296 LOC102723971A0A1B0GUV8 181 aa12.57□□□□□ -0.4
CLK3-227ENST00000570296 TNFSF12O43508 249 aa12.57□□□□□ -0.4
CLK3-227ENST00000570296 MT-CO2P00403 227 aa12.57□□□□□ -0.4
CLK3-227ENST00000570296 IFNA5P01569 189 aa12.57□□□□□ -0.4
CLK3-227ENST00000570296 HOXA1P49639 335 aaPredicted RBP12.57□□□□□ -0.4
CLK3-227ENST00000570296 CLDN12P56749 244 aa12.57□□□□□ -0.4
CLK3-227ENST00000570296 KRTAP10-1P60331 282 aa12.57□□□□□ -0.4
CLK3-227ENST00000570296 TMEM56Q96MV1 263 aa12.57□□□□□ -0.4
CLK3-227ENST00000570296 TMEM272A0A1B0GTI8 110 aa12.56□□□□□ -0.4
CLK3-227ENST00000570296 MYL12BO14950 172 aa12.56□□□□□ -0.4
CLK3-227ENST00000570296 HBE1P02100 147 aa12.56□□□□□ -0.4
CLK3-227ENST00000570296 HLA-DRB4P13762 266 aa12.56□□□□□ -0.4
CLK3-227ENST00000570296 EIF2B2P49770 351 aaKnown RBP12.56□□□□□ -0.4
CLK3-227ENST00000570296 SNRPD3P62318 126 aaKnown RBP12.56□□□□□ -0.4
CLK3-227ENST00000570296 CATR1Q13166 79 aa12.56□□□□□ -0.4
CLK3-227ENST00000570296 CLINT1Q14677 625 aa12.56□□□□□ -0.4
CLK3-227ENST00000570296 MOB3AQ96BX8 217 aa12.56□□□□□ -0.4
CLK3-227ENST00000570296 METTL26Q96S19 204 aa12.56□□□□□ -0.4
CLK3-227ENST00000570296 SEPSECSQ9HD40 501 aaKnown RBP12.56□□□□□ -0.4
CLK3-227ENST00000570296 COMMD9Q9P000 198 aa12.56□□□□□ -0.4
CLK3-227ENST00000570296 OR51B2Q9Y5P1 312 aa12.56□□□□□ -0.4
CLK3-227ENST00000570296 HLA-DRB4X5D2U9 266 aa12.56□□□□□ -0.4
CLK3-227ENST00000570296 LRP1Q07954 4544 aaKnown RBP12.55□□□□□ -0.4
CLK3-227ENST00000570296 A0A1B0GU03 582 aa12.55□□□□□ -0.4
CLK3-227ENST00000570296 SULT1C2O00338 296 aa12.55□□□□□ -0.4
CLK3-227ENST00000570296 RGS10O43665 173 aa12.55□□□□□ -0.4
CLK3-227ENST00000570296 IGHV3-48P01763 117 aa12.55□□□□□ -0.4
CLK3-227ENST00000570296 CRYBB3P26998 211 aa12.55□□□□□ -0.4
CLK3-227ENST00000570296 FUSP35637 526 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLK3-227ENST00000570296 NPBWR1P48145 328 aa12.55□□□□□ -0.4
CLK3-227ENST00000570296 CNIH2Q6PI25 160 aa12.55□□□□□ -0.4
CLK3-227ENST00000570296 ZBTB34Q8NCN2 500 aa12.55□□□□□ -0.4
CLK3-227ENST00000570296 NARS2Q96I59 477 aaKnown RBP12.55□□□□□ -0.4
CLK3-227ENST00000570296 CCDC90BQ9GZT6 254 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms