RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CTSGP08311 255 aa15.25■□□□□ 0.03
CLK3-225ENST00000569063 HAGHQ16775 308 aa15.25■□□□□ 0.03
CLK3-225ENST00000569063 BTNL8Q6UX41 500 aa15.25■□□□□ 0.03
CLK3-225ENST00000569063 LINC00322Q6ZN03 302 aaPredicted RBP15.25■□□□□ 0.03
CLK3-225ENST00000569063 FAM219AQ8IW50 185 aa15.25■□□□□ 0.03
CLK3-225ENST00000569063 DAZ1Q9NQZ3 744 aaKnown RBP15.25■□□□□ 0.03
CLK3-225ENST00000569063 SELENOKQ9Y6D0 94 aa15.25■□□□□ 0.03
CLK3-225ENST00000569063 TRAV25A0A0B4J276 109 aa15.24■□□□□ 0.03
CLK3-225ENST00000569063 A0A0G2JRQ6 117 aa15.24■□□□□ 0.03
CLK3-225ENST00000569063 CRYM-AS1A6NIL9 109 aa15.24■□□□□ 0.03
CLK3-225ENST00000569063 K7EMT4 169 aa15.24■□□□□ 0.03
CLK3-225ENST00000569063 MT-CO2P00403 227 aa15.24■□□□□ 0.03
CLK3-225ENST00000569063 MFAP4P55083 255 aa15.24■□□□□ 0.03
CLK3-225ENST00000569063 DHODHQ02127 395 aa15.24■□□□□ 0.03
CLK3-225ENST00000569063 SPINK9Q5DT21 86 aa15.24■□□□□ 0.03
CLK3-225ENST00000569063 SLC35G3Q8N808 338 aa15.24■□□□□ 0.03
CLK3-225ENST00000569063 PDCD10Q9BUL8 212 aa15.24■□□□□ 0.03
CLK3-225ENST00000569063 SCP2D1Q9UJQ7 156 aa15.24■□□□□ 0.03
CLK3-225ENST00000569063 OR11H12B2RN74 326 aa15.23■□□□□ 0.03
CLK3-225ENST00000569063 SNCAP37840 140 aa15.23■□□□□ 0.03
CLK3-225ENST00000569063 AARDQ4LEZ3 155 aa15.23■□□□□ 0.03
CLK3-225ENST00000569063 PVRIGQ6DKI7 326 aa15.23■□□□□ 0.03
CLK3-225ENST00000569063 Q6ZRM9 215 aa15.23■□□□□ 0.03
CLK3-225ENST00000569063 SLC16A13Q7RTY0 426 aa15.23■□□□□ 0.03
CLK3-225ENST00000569063 DEFB125Q8N687 156 aa15.23■□□□□ 0.03
CLK3-225ENST00000569063 RNASE11Q8TAA1 199 aaKnown RBP15.23■□□□□ 0.03
CLK3-225ENST00000569063 LHFPL5Q8TAF8 219 aa15.23■□□□□ 0.03
CLK3-225ENST00000569063 RBPMSQ93062 196 aaKnown RBP15.23■□□□□ 0.03
CLK3-225ENST00000569063 ZNF414Q96IQ9 312 aa15.23■□□□□ 0.03
CLK3-225ENST00000569063 RBM38Q9H0Z9 239 aaKnown RBP15.23■□□□□ 0.03
CLK3-225ENST00000569063 TENM3Q9P273 2699 aa15.22■□□□□ 0.03
CLK3-225ENST00000569063 CCDC160A6NGH7 325 aa15.22■□□□□ 0.03
CLK3-225ENST00000569063 C15orf62A8K5M9 175 aa15.22■□□□□ 0.03
CLK3-225ENST00000569063 NUPL2O15504 423 aaKnown RBP15.22■□□□□ 0.03
CLK3-225ENST00000569063 ETV6P41212 452 aa15.22■□□□□ 0.03
CLK3-225ENST00000569063 RELQ04864 619 aaPredicted RBP15.22■□□□□ 0.03
CLK3-225ENST00000569063 ANKRD55Q3KP44 614 aa15.22■□□□□ 0.03
CLK3-225ENST00000569063 RBPMS2Q6ZRY4 209 aaKnown RBP15.22■□□□□ 0.03
CLK3-225ENST00000569063 SELENOHQ8IZQ5 122 aaKnown RBP15.22■□□□□ 0.03
CLK3-225ENST00000569063 PINX1Q96BK5 328 aaKnown RBP15.22■□□□□ 0.03
CLK3-225ENST00000569063 SCGB3A2Q96PL1 93 aa15.22■□□□□ 0.03
CLK3-225ENST00000569063 SPATA25Q9BR10 227 aa15.22■□□□□ 0.03
CLK3-225ENST00000569063 C3orf84H3BNL1 204 aa15.21■□□□□ 0.03
CLK3-225ENST00000569063 SCAF4O95104 1147 aaKnown RBP15.21■□□□□ 0.03
CLK3-225ENST00000569063 SUB1P53999 127 aaKnown RBP eCLIP15.21■□□□□ 0.03
CLK3-225ENST00000569063 OR52B4Q8NGK2 314 aa15.21■□□□□ 0.03
CLK3-225ENST00000569063 OR52E5Q8NH55 327 aa15.21■□□□□ 0.03
CLK3-225ENST00000569063 GALNT14Q96FL9 552 aa15.21■□□□□ 0.03
CLK3-225ENST00000569063 C20orf24Q9BUV8 137 aa15.21■□□□□ 0.03
CLK3-225ENST00000569063 WFDC10AQ9H1F0 79 aa15.21■□□□□ 0.03
CLK3-225ENST00000569063 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.21■□□□□ 0.03
CLK3-225ENST00000569063 MCUBQ9NWR8 336 aa15.21■□□□□ 0.03
CLK3-225ENST00000569063 TMEM56-RWDD3S4R434 201 aa15.21■□□□□ 0.03
CLK3-225ENST00000569063 RBMY1BA6NDE4 496 aaKnown RBP15.2■□□□□ 0.02
CLK3-225ENST00000569063 RBMY1EA6NEQ0 496 aaKnown RBP15.2■□□□□ 0.02
CLK3-225ENST00000569063 ZNF701M0R085 212 aaPredicted RBP15.2■□□□□ 0.02
CLK3-225ENST00000569063 CORTO00230 105 aa15.2■□□□□ 0.02
CLK3-225ENST00000569063 IGHV3-48P01763 117 aa15.2■□□□□ 0.02
CLK3-225ENST00000569063 RBMY1DP0C7P1 496 aaKnown RBP15.2■□□□□ 0.02
CLK3-225ENST00000569063 RNASE2P10153 161 aaKnown RBP15.2■□□□□ 0.02
CLK3-225ENST00000569063 HOXA1P49639 335 aaPredicted RBP15.2■□□□□ 0.02
CLK3-225ENST00000569063 SPCS3P61009 180 aa15.2■□□□□ 0.02
CLK3-225ENST00000569063 TMEM230Q96A57 120 aa15.2■□□□□ 0.02
CLK3-225ENST00000569063 OR10C1Q96KK4 312 aa15.2■□□□□ 0.02
CLK3-225ENST00000569063 CITED4Q96RK1 184 aa15.2■□□□□ 0.02
CLK3-225ENST00000569063 SRD5A3Q9H8P0 318 aa15.2■□□□□ 0.02
CLK3-225ENST00000569063 ENY2Q9NPA8 101 aa15.2■□□□□ 0.02
CLK3-225ENST00000569063 KCNIP3Q9Y2W7 256 aa15.2■□□□□ 0.02
CLK3-225ENST00000569063 V9GYH0 126 aa15.2■□□□□ 0.02
CLK3-225ENST00000569063 IGHV3OR16-8A0A075B7F1 116 aa15.19■□□□□ 0.02
CLK3-225ENST00000569063 GNG7O60262 68 aa15.19■□□□□ 0.02
CLK3-225ENST00000569063 S100A5P33763 92 aa15.19■□□□□ 0.02
CLK3-225ENST00000569063 KLF9Q13886 244 aaPredicted RBP15.19■□□□□ 0.02
CLK3-225ENST00000569063 BSXQ3C1V8 233 aa15.19■□□□□ 0.02
CLK3-225ENST00000569063 PYDC2Q56P42 97 aa15.19■□□□□ 0.02
CLK3-225ENST00000569063 TMEM268Q5VZI3 342 aa15.19■□□□□ 0.02
CLK3-225ENST00000569063 DUSP18Q8NEJ0 188 aa15.19■□□□□ 0.02
CLK3-225ENST00000569063 IL22RA2Q969J5 263 aa15.19■□□□□ 0.02
CLK3-225ENST00000569063 TRIM63Q969Q1 353 aa15.19■□□□□ 0.02
CLK3-225ENST00000569063 GPR146Q96CH1 333 aa15.19■□□□□ 0.02
CLK3-225ENST00000569063 SPAG8Q99932 426 aaPredicted RBP15.19■□□□□ 0.02
CLK3-225ENST00000569063 TSPAN4O14817 238 aa15.18■□□□□ 0.02
CLK3-225ENST00000569063 FAUP35544 74 aaKnown RBP15.18■□□□□ 0.02
CLK3-225ENST00000569063 NPBWR1P48145 328 aa15.18■□□□□ 0.02
CLK3-225ENST00000569063 TMEM187Q14656 261 aa15.18■□□□□ 0.02
CLK3-225ENST00000569063 LAMTOR1Q6IAA8 161 aa15.18■□□□□ 0.02
CLK3-225ENST00000569063 MUC7Q8TAX7 377 aa15.18■□□□□ 0.02
CLK3-225ENST00000569063 STAB2Q8WWQ8 2551 aa15.18■□□□□ 0.02
CLK3-225ENST00000569063 ZNF207O43670 478 aaKnown RBP15.17■□□□□ 0.02
CLK3-225ENST00000569063 AP3S2P59780 193 aa15.17■□□□□ 0.02
CLK3-225ENST00000569063 ZNF79Q15937 498 aa15.17■□□□□ 0.02
CLK3-225ENST00000569063 CCDC190Q86UF4 302 aa15.17■□□□□ 0.02
CLK3-225ENST00000569063 TOMM5Q8N4H5 51 aa15.17■□□□□ 0.02
CLK3-225ENST00000569063 HIPK2Q9H2X6 1198 aa15.17■□□□□ 0.02
CLK3-225ENST00000569063 CACNG5Q9UF02 275 aa15.17■□□□□ 0.02
CLK3-225ENST00000569063 CACFD1Q9UGQ2 172 aa15.17■□□□□ 0.02
CLK3-225ENST00000569063 SMPXQ9UHP9 88 aa15.17■□□□□ 0.02
CLK3-225ENST00000569063 YIF1AO95070 293 aa15.16■□□□□ 0.02
CLK3-225ENST00000569063 SUPT4H1P63272 117 aaKnown RBP15.16■□□□□ 0.02
CLK3-225ENST00000569063 DEDD2Q8WXF8 326 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms