RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 FRMD6-AS1P0C7T7 363 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 RPEL1Q2QD12 228 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 IL34Q6ZMJ4 242 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 CENPSQ8N2Z9 138 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 EEF1AKMT3Q96AZ1 226 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 TSC22D3Q99576 134 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 PTTG2Q9NZH5 202 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 SORL1Q92673 2214 aa10.55□□□□□ -0.72
CLN3-235ENST00000568497 IZUMO1RA6ND01 250 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 F8W735 103 aaPredicted RBP10.54□□□□□ -0.72
CLN3-235ENST00000568497 LYRM1O43325 122 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 ZNF207O43670 478 aaKnown RBP10.54□□□□□ -0.72
CLN3-235ENST00000568497 ADAP1O75689 374 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 BRI3O95415 125 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 ARL3P36405 182 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 KLF5Q13887 457 aaPredicted RBP10.54□□□□□ -0.72
CLN3-235ENST00000568497 UNQ9165/PRO28630Q6UXU0 137 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 OR5B3Q8NH48 314 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 ZNF502Q8TBZ5 544 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 SCARB1Q8WTV0 552 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 GALNT14Q96FL9 552 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 ZNF414Q96IQ9 312 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 SCGB3A2Q96PL1 93 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 SEC22CQ9BRL7 303 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 CHRDL1Q9BU40 450 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 EDA2RQ9HAV5 297 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 FKBP11Q9NYL4 201 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 KCNIP3Q9Y2W7 256 aa10.54□□□□□ -0.72
CLN3-235ENST00000568497 C9orf170A2RU37 121 aa10.53□□□□□ -0.72
CLN3-235ENST00000568497 MT-CO2P00403 227 aa10.53□□□□□ -0.72
CLN3-235ENST00000568497 CSN3P07498 182 aa10.53□□□□□ -0.72
CLN3-235ENST00000568497 RNASE2P10153 161 aaKnown RBP10.53□□□□□ -0.72
CLN3-235ENST00000568497 SPNP16150 400 aa10.53□□□□□ -0.72
CLN3-235ENST00000568497 PLECQ15149 4684 aaKnown RBP10.53□□□□□ -0.72
CLN3-235ENST00000568497 RBMS2Q15434 407 aaKnown RBP10.53□□□□□ -0.72
CLN3-235ENST00000568497 NMSQ5H8A3 153 aa10.53□□□□□ -0.72
CLN3-235ENST00000568497 ACSM6Q6P461 480 aa10.53□□□□□ -0.72
CLN3-235ENST00000568497 LGI3Q8N145 548 aa10.53□□□□□ -0.72
CLN3-235ENST00000568497 TMEM170AQ8WVE7 144 aa10.53□□□□□ -0.72
CLN3-235ENST00000568497 SLC25A21Q9BQT8 299 aaPredicted RBP10.53□□□□□ -0.72
CLN3-235ENST00000568497 MAGT1Q9H0U3 335 aa10.53□□□□□ -0.72
CLN3-235ENST00000568497 ZNF320A2RRD8 509 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 CEBPZOSA8MTT3 80 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 I3L2K1 104 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 FGF2P09038 288 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 IAPPP10997 89 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 TM4SF20Q53R12 229 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 Q56UQ5 140 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 TMEM128Q5BJH2 165 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 ZNF429Q86V71 674 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 OR9G4Q8NGQ1 327 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 PDCD10Q9BUL8 212 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 C20orf85Q9H1P6 137 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 RBKSQ9H477 322 aa10.52□□□□□ -0.73
CLN3-235ENST00000568497 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.52□□□□□ -0.73
CLN3-235ENST00000568497 FRAS1Q86XX4 4008 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 IGHV3-49A0A0A0MS15 119 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 NAP1L6A6NFF2 107 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 CCSO14618 274 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 DHFRP00374 187 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 OR4E1P0C645 316 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 SULT1A3P0DMM9 295 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 SULT1A4P0DMN0 295 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 HIST1H1BP16401 226 aaKnown RBP10.51□□□□□ -0.73
CLN3-235ENST00000568497 ZP3P21754 424 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 ADMP35318 185 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 ERHP84090 104 aaKnown RBP10.51□□□□□ -0.73
CLN3-235ENST00000568497 DHRS2Q13268 280 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 C4orf46Q504U0 113 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 GGNBP1Q5YKI7 109 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 CADM3Q8N126 398 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 SRSF8Q9BRL6 282 aaKnown RBP10.51□□□□□ -0.73
CLN3-235ENST00000568497 FNDC4Q9H6D8 234 aaPredicted RBP10.51□□□□□ -0.73
CLN3-235ENST00000568497 C21orf62Q9NYP8 219 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 ALMS1Q8TCU4 4167 aa10.51□□□□□ -0.73
CLN3-235ENST00000568497 RYR1P21817 5038 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 A0A0B4J2A0 478 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 CENPXA8MT69 81 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 GGCTO75223 188 aaKnown RBP10.5□□□□□ -0.73
CLN3-235ENST00000568497 ATG12O94817 140 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 ANXA3P12429 323 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 ZNF846Q147U1 533 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 SMCO1Q147U7 214 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 KLK9Q2XQG4 91 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 PLET1Q6UQ28 207 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 OR1P1Q8NH06 330 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 OR1S1Q8NH92 325 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 OR4C12Q96R67 309 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 CCDC32Q9BV29 185 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 ENY2Q9NPA8 101 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 HEYLQ9NQ87 328 aaPredicted RBP10.5□□□□□ -0.73
CLN3-235ENST00000568497 SHPKQ9UHJ6 478 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 KLK9Q9UKQ9 250 aa10.5□□□□□ -0.73
CLN3-235ENST00000568497 IGHV3OR16-13A0A075B7E8 117 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 IGHV3-74A0A0B4J1X5 117 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 TGOLN2O43493 480 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 B3GALNT1O75752 331 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 UPK1BO75841 260 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 TCRBP04435 133 aa10.49□□□□□ -0.73
CLN3-235ENST00000568497 SNCAP37840 140 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms