RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	SLC5A7	Q9GZV3	580 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	PLEKHA2	Q9HB19	425 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	S100A14	Q9HCY8	104 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	PLCXD1	Q9NUJ7	323 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	ANXA10	Q9UJ72	324 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	PUS1	Q9Y606	427 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	IGHV3OR16-12	A0A075B7B8	117 aa		11.47	□□□□□ -0.57
CLK3-223	ENST00000568488		A0A1W2PS18	150 aa		11.47	□□□□□ -0.57
CLK3-223	ENST00000568488	TMEM189	A5PLL7	270 aa		11.47	□□□□□ -0.57
CLK3-223	ENST00000568488	SNAPC5	O75971	98 aa		11.47	□□□□□ -0.57
CLK3-223	ENST00000568488	HSMCR30	P0CW71	290 aa		11.47	□□□□□ -0.57
CLK3-223	ENST00000568488	NPPC	P23582	126 aa		11.47	□□□□□ -0.57
CLK3-223	ENST00000568488	FAM3B	P58499	235 aa	Predicted RBP	11.47	□□□□□ -0.57
CLK3-223	ENST00000568488	HACD4	Q5VWC8	232 aa		11.47	□□□□□ -0.57
CLK3-223	ENST00000568488	DHRSX	Q8N5I4	330 aa		11.47	□□□□□ -0.57
CLK3-223	ENST00000568488	OR13F1	Q8NGS4	319 aa		11.47	□□□□□ -0.57
CLK3-223	ENST00000568488	OR1P1	Q8NH06	330 aa		11.47	□□□□□ -0.57
CLK3-223	ENST00000568488	LSM2	Q9Y333	95 aa	Known RBP	11.47	□□□□□ -0.57
CLK3-223	ENST00000568488	PTGES3L	E9PB15	166 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	PTHLH	P12272	177 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	OR10A3	P58181	314 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	FXYD4	P59646	89 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	TRAM1	Q15629	374 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	MSMO1	Q15800	293 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	PSMG4	Q5JS54	123 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	FAM222A	Q5U5X8	452 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	AADACL3	Q5VUY0	350 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	ZNF600	Q6ZNG1	722 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	TPRA1	Q86W33	373 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	C8orf59	Q8N0T1	100 aa	Predicted RBP	11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	ZFAND3	Q9H8U3	227 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	FKBP14	Q9NWM8	211 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	COMMD9	Q9P000	198 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	DKK2	Q9UBU2	259 aa		11.46	□□□□□ -0.57
CLK3-223	ENST00000568488	MARCH11	A6NNE9	402 aa		11.45	□□□□□ -0.58
CLK3-223	ENST00000568488	KRAS	P01116	189 aa		11.45	□□□□□ -0.58
CLK3-223	ENST00000568488	GNAO1	P09471	354 aa		11.45	□□□□□ -0.58
CLK3-223	ENST00000568488	GNG2	P59768	71 aa		11.45	□□□□□ -0.58
CLK3-223	ENST00000568488	ARPC4	P59998	168 aa		11.45	□□□□□ -0.58
CLK3-223	ENST00000568488	MYCBP2	O75592	4640 aa		11.45	□□□□□ -0.58
CLK3-223	ENST00000568488	UBR4	Q5T4S7	5183 aa		11.44	□□□□□ -0.58
CLK3-223	ENST00000568488		A0A1B0GU03	582 aa		11.44	□□□□□ -0.58
CLK3-223	ENST00000568488	TMEM235	A6NFC5	223 aa		11.44	□□□□□ -0.58
CLK3-223	ENST00000568488	PDCD5	O14737	125 aa		11.44	□□□□□ -0.58
CLK3-223	ENST00000568488	FGF9	P31371	208 aa	Predicted RBP	11.44	□□□□□ -0.58
CLK3-223	ENST00000568488	P2RY1	P47900	373 aa		11.44	□□□□□ -0.58
CLK3-223	ENST00000568488	KRTAP10-2	P60368	255 aa		11.44	□□□□□ -0.58
CLK3-223	ENST00000568488	FABP5	Q01469	135 aa		11.44	□□□□□ -0.58
CLK3-223	ENST00000568488	DHRS2	Q13268	280 aa		11.44	□□□□□ -0.58
CLK3-223	ENST00000568488	DCANP1	Q8TF63	244 aa		11.44	□□□□□ -0.58
CLK3-223	ENST00000568488	NEU1	Q99519	415 aa		11.44	□□□□□ -0.58
CLK3-223	ENST00000568488	HELT	A6NFD8	242 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	IFITM5	A6NNB3	132 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	PPY	P01298	95 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	PSMA1	P25786	263 aa	Known RBP	11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	G6PC	P35575	357 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	LPAR6	P43657	344 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	NPBWR1	P48145	328 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	ZNF705A	Q6ZN79	300 aa	Predicted RBP	11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	ZNF818P	Q6ZRF7	136 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	ZNRF2	Q8NHG8	242 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	METTL26	Q96S19	204 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	CCDC90B	Q9GZT6	254 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	FKBP11	Q9NYL4	201 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	RFNG	Q9Y644	331 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	VPS13B	Q7Z7G8	4022 aa		11.43	□□□□□ -0.58
CLK3-223	ENST00000568488	TEX48	A0A1B0GUV7	120 aa		11.42	□□□□□ -0.58
CLK3-223	ENST00000568488	SMIM9	A6NGZ8	99 aa		11.42	□□□□□ -0.58
CLK3-223	ENST00000568488	DBX1	A6NMT0	343 aa		11.42	□□□□□ -0.58
CLK3-223	ENST00000568488	SSX5	O60225	188 aa		11.42	□□□□□ -0.58
CLK3-223	ENST00000568488	PPP5C	P53041	499 aa		11.42	□□□□□ -0.58
CLK3-223	ENST00000568488	FXYD7	P58549	80 aa		11.42	□□□□□ -0.58
CLK3-223	ENST00000568488	TMEM17	Q86X19	198 aa		11.42	□□□□□ -0.58
CLK3-223	ENST00000568488	C15orf53	Q8NAA6	179 aa		11.42	□□□□□ -0.58
CLK3-223	ENST00000568488	TSPAN14	Q8NG11	270 aa		11.42	□□□□□ -0.58
CLK3-223	ENST00000568488	NARS2	Q96I59	477 aa	Known RBP	11.42	□□□□□ -0.58
CLK3-223	ENST00000568488	PRND	Q9UKY0	176 aa		11.42	□□□□□ -0.58
CLK3-223	ENST00000568488	ZNF705F	A8MVS1	300 aa	Predicted RBP	11.41	□□□□□ -0.58
CLK3-223	ENST00000568488	IGKV3-20	P01619	116 aa		11.41	□□□□□ -0.58
CLK3-223	ENST00000568488	ZNF705D	P0CH99	300 aa	Predicted RBP	11.41	□□□□□ -0.58
CLK3-223	ENST00000568488	ZNF705B	P0CI00	300 aa	Predicted RBP	11.41	□□□□□ -0.58
CLK3-223	ENST00000568488	GSG1L	Q6UXU4	331 aa		11.41	□□□□□ -0.58
CLK3-223	ENST00000568488	BEST4	Q8NFU0	473 aa		11.41	□□□□□ -0.58
CLK3-223	ENST00000568488		H3BMM0	161 aa		11.4	□□□□□ -0.58
CLK3-223	ENST00000568488	CASQ2	O14958	399 aa	Predicted RBP	11.4	□□□□□ -0.58
CLK3-223	ENST00000568488	TMEM50A	O95807	157 aa		11.4	□□□□□ -0.58
CLK3-223	ENST00000568488	FCER2	P06734	321 aa		11.4	□□□□□ -0.58
CLK3-223	ENST00000568488	F2R	P25116	425 aa		11.4	□□□□□ -0.58
CLK3-223	ENST00000568488	EIF2B2	P49770	351 aa	Known RBP	11.4	□□□□□ -0.58
CLK3-223	ENST00000568488	DAD1	P61803	113 aa		11.4	□□□□□ -0.58
CLK3-223	ENST00000568488	OXA1L	Q15070	435 aa		11.4	□□□□□ -0.58
CLK3-223	ENST00000568488	FCAMR	Q8WWV6	532 aa		11.4	□□□□□ -0.58
CLK3-223	ENST00000568488	TMEM230	Q96A57	120 aa		11.4	□□□□□ -0.58
CLK3-223	ENST00000568488	SRRM2	Q9UQ35	2752 aa	Known RBP	11.4	□□□□□ -0.58
CLK3-223	ENST00000568488	RPS10-NUDT3	A0A1W2PQS6	291 aa		11.39	□□□□□ -0.59
CLK3-223	ENST00000568488	NUDT3	O95989	172 aa		11.39	□□□□□ -0.59
CLK3-223	ENST00000568488	RLN1	P04808	185 aa		11.39	□□□□□ -0.59
CLK3-223	ENST00000568488	CRYBB3	P26998	211 aa		11.39	□□□□□ -0.59
CLK3-223	ENST00000568488	KCTD21	Q4G0X4	260 aa		11.39	□□□□□ -0.59
CLK3-223	ENST00000568488		Q5VSD8	79 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms