RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 UXS1Q8NBZ7 420 aa11.35□□□□□ -0.59
VPS39-210ENST00000568357 OR2K2Q8NGT1 345 aa11.35□□□□□ -0.59
VPS39-210ENST00000568357 RNASE11Q8TAA1 199 aaKnown RBP11.35□□□□□ -0.59
VPS39-210ENST00000568357 GPR146Q96CH1 333 aa11.35□□□□□ -0.59
VPS39-210ENST00000568357 MISP3Q96FF7 219 aa11.35□□□□□ -0.59
VPS39-210ENST00000568357 BSCL2Q96G97 398 aaPredicted RBP11.35□□□□□ -0.59
VPS39-210ENST00000568357 ZNF436Q9C0F3 470 aaPredicted RBP11.35□□□□□ -0.59
VPS39-210ENST00000568357 MT-CO2P00403 227 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 IGHV3-48P01763 117 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 CTSGP08311 255 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 IGHV4-30-4P0DP06 118 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 AKR1C4P17516 323 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 SUPT4H1P63272 117 aaKnown RBP11.34□□□□□ -0.59
VPS39-210ENST00000568357 AARDQ4LEZ3 155 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 FAM219AQ8IW50 185 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 SLC35G3Q8N808 338 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 UBAC2Q8NBM4 344 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 DYNLRB2Q8TF09 96 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 GALNT14Q96FL9 552 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 ZNF414Q96IQ9 312 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 ATP6V0BQ99437 205 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 SRRQ9GZT4 340 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.34□□□□□ -0.59
VPS39-210ENST00000568357 TECRQ9NZ01 308 aaKnown RBP11.34□□□□□ -0.59
VPS39-210ENST00000568357 MLXQ9UH92 298 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 KCNIP3Q9Y2W7 256 aa11.34□□□□□ -0.59
VPS39-210ENST00000568357 C8orf88P0DMB2 117 aa11.33□□□□□ -0.6
VPS39-210ENST00000568357 FAUP35544 74 aaKnown RBP11.33□□□□□ -0.6
VPS39-210ENST00000568357 SNCAP37840 140 aa11.33□□□□□ -0.6
VPS39-210ENST00000568357 AP3S2P59780 193 aa11.33□□□□□ -0.6
VPS39-210ENST00000568357 Q56UQ5 140 aa11.33□□□□□ -0.6
VPS39-210ENST00000568357 SPANXN2Q5MJ10 180 aa11.33□□□□□ -0.6
VPS39-210ENST00000568357 PVRIGQ6DKI7 326 aa11.33□□□□□ -0.6
VPS39-210ENST00000568357 SPSB3Q6PJ21 355 aa11.33□□□□□ -0.6
VPS39-210ENST00000568357 PINX1Q96BK5 328 aaKnown RBP11.33□□□□□ -0.6
VPS39-210ENST00000568357 PDCD10Q9BUL8 212 aa11.33□□□□□ -0.6
VPS39-210ENST00000568357 C19orf73Q9NVV2 129 aa11.33□□□□□ -0.6
VPS39-210ENST00000568357 A8MZ25 164 aa11.32□□□□□ -0.6
VPS39-210ENST00000568357 RNASE2P10153 161 aaKnown RBP11.32□□□□□ -0.6
VPS39-210ENST00000568357 MFAP4P55083 255 aa11.32□□□□□ -0.6
VPS39-210ENST00000568357 ELLP55199 621 aaPredicted RBP11.32□□□□□ -0.6
VPS39-210ENST00000568357 SPCS3P61009 180 aa11.32□□□□□ -0.6
VPS39-210ENST00000568357 BAK1Q16611 211 aa11.32□□□□□ -0.6
VPS39-210ENST00000568357 OR52E5Q8NH55 327 aa11.32□□□□□ -0.6
VPS39-210ENST00000568357 TMEM190Q8WZ59 177 aa11.32□□□□□ -0.6
VPS39-210ENST00000568357 WDR89Q96FK6 387 aaPredicted RBP11.32□□□□□ -0.6
VPS39-210ENST00000568357 PALMDQ9NP74 551 aa11.32□□□□□ -0.6
VPS39-210ENST00000568357 CACNG5Q9UF02 275 aa11.32□□□□□ -0.6
VPS39-210ENST00000568357 UFC1Q9Y3C8 167 aa11.32□□□□□ -0.6
VPS39-210ENST00000568357 TENM2Q9NT68 2774 aa11.32□□□□□ -0.6
VPS39-210ENST00000568357 IGHV3OR16-8A0A075B7F1 116 aa11.31□□□□□ -0.6
VPS39-210ENST00000568357 NDUFA4O00483 81 aa11.31□□□□□ -0.6
VPS39-210ENST00000568357 FCGR2BP31994 310 aaPredicted RBP11.31□□□□□ -0.6
VPS39-210ENST00000568357 HOXA1P49639 335 aaPredicted RBP11.31□□□□□ -0.6
VPS39-210ENST00000568357 MLANAQ16655 118 aa11.31□□□□□ -0.6
VPS39-210ENST00000568357 GUCA2BQ16661 112 aa11.31□□□□□ -0.6
VPS39-210ENST00000568357 ZNF57Q68EA5 555 aaPredicted RBP11.31□□□□□ -0.6
VPS39-210ENST00000568357 LYZL2Q7Z4W2 148 aa11.31□□□□□ -0.6
VPS39-210ENST00000568357 TMED4Q7Z7H5 227 aa11.31□□□□□ -0.6
VPS39-210ENST00000568357 GTSCR1Q86UQ5 136 aa11.31□□□□□ -0.6
VPS39-210ENST00000568357 TMEM61Q8N0U2 210 aa11.31□□□□□ -0.6
VPS39-210ENST00000568357 IL22RA2Q969J5 263 aa11.31□□□□□ -0.6
VPS39-210ENST00000568357 SDHCQ99643 169 aaPredicted RBP11.31□□□□□ -0.6
VPS39-210ENST00000568357 TXN2Q99757 166 aa11.31□□□□□ -0.6
VPS39-210ENST00000568357 NDUFA13Q9P0J0 144 aa11.31□□□□□ -0.6
VPS39-210ENST00000568357 MRPL27Q9P0M9 148 aaKnown RBP11.31□□□□□ -0.6
VPS39-210ENST00000568357 U3KQK5 164 aa11.31□□□□□ -0.6
VPS39-210ENST00000568357 HUWE1Q7Z6Z7 4374 aaKnown RBP11.31□□□□□ -0.6
VPS39-210ENST00000568357 CD7P09564 240 aa11.3□□□□□ -0.6
VPS39-210ENST00000568357 CD81P60033 236 aa11.3□□□□□ -0.6
VPS39-210ENST00000568357 BSXQ3C1V8 233 aa11.3□□□□□ -0.6
VPS39-210ENST00000568357 BTNL8Q6UX41 500 aa11.3□□□□□ -0.6
VPS39-210ENST00000568357 DEDD2Q8WXF8 326 aa11.3□□□□□ -0.6
VPS39-210ENST00000568357 MARC2Q969Z3 335 aa11.3□□□□□ -0.6
VPS39-210ENST00000568357 C20orf24Q9BUV8 137 aa11.3□□□□□ -0.6
VPS39-210ENST00000568357 ENY2Q9NPA8 101 aa11.3□□□□□ -0.6
VPS39-210ENST00000568357 GAR1Q9NY12 217 aaKnown RBP11.3□□□□□ -0.6
VPS39-210ENST00000568357 A0A0B4J2A0 478 aa11.29□□□□□ -0.6
VPS39-210ENST00000568357 ZNF207O43670 478 aaKnown RBP11.29□□□□□ -0.6
VPS39-210ENST00000568357 NXPH3O95157 252 aa11.29□□□□□ -0.6
VPS39-210ENST00000568357 CCR6P51684 374 aa11.29□□□□□ -0.6
VPS39-210ENST00000568357 SUB1P53999 127 aaKnown RBP eCLIP11.29□□□□□ -0.6
VPS39-210ENST00000568357 TMEM128Q5BJH2 165 aa11.29□□□□□ -0.6
VPS39-210ENST00000568357 NMSQ5H8A3 153 aa11.29□□□□□ -0.6
VPS39-210ENST00000568357 SLC25A21Q9BQT8 299 aaPredicted RBP11.29□□□□□ -0.6
VPS39-210ENST00000568357 NEURL2Q9BR09 285 aa11.29□□□□□ -0.6
VPS39-210ENST00000568357 FNDC4Q9H6D8 234 aaPredicted RBP11.29□□□□□ -0.6
VPS39-210ENST00000568357 DAZ1Q9NQZ3 744 aaKnown RBP11.29□□□□□ -0.6
VPS39-210ENST00000568357 MRPL36Q9P0J6 103 aaKnown RBP11.29□□□□□ -0.6
VPS39-210ENST00000568357 SHPKQ9UHJ6 478 aa11.29□□□□□ -0.6
VPS39-210ENST00000568357 K7EMT4 169 aa11.28□□□□□ -0.6
VPS39-210ENST00000568357 NUPL2O15504 423 aaKnown RBP11.28□□□□□ -0.6
VPS39-210ENST00000568357 SCAF4O95104 1147 aaKnown RBP11.28□□□□□ -0.6
VPS39-210ENST00000568357 SULT1A3P0DMM9 295 aa11.28□□□□□ -0.6
VPS39-210ENST00000568357 SULT1A4P0DMN0 295 aa11.28□□□□□ -0.6
VPS39-210ENST00000568357 ANXA3P12429 323 aa11.28□□□□□ -0.6
VPS39-210ENST00000568357 LGI3Q8N145 548 aa11.28□□□□□ -0.6
VPS39-210ENST00000568357 DUSP18Q8NEJ0 188 aa11.28□□□□□ -0.6
VPS39-210ENST00000568357 LYSTQ99698 3801 aa11.28□□□□□ -0.6
VPS39-210ENST00000568357 HEYLQ9NQ87 328 aaPredicted RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms