RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 IGHV3-49A0A0A0MS15 119 aa11.87□□□□□ -0.51
CLN3-229ENST00000567963 GNG7O60262 68 aa11.87□□□□□ -0.51
CLN3-229ENST00000567963 GABARAPO95166 117 aa11.87□□□□□ -0.51
CLN3-229ENST00000567963 ATF4P18848 351 aaPredicted RBP11.87□□□□□ -0.51
CLN3-229ENST00000567963 RORCP51449 518 aa11.87□□□□□ -0.51
CLN3-229ENST00000567963 RND3P61587 244 aa11.87□□□□□ -0.51
CLN3-229ENST00000567963 LINC00476Q8WZB0 136 aa11.87□□□□□ -0.51
CLN3-229ENST00000567963 PINX1Q96BK5 328 aaKnown RBP11.87□□□□□ -0.51
CLN3-229ENST00000567963 ZNF486Q96H40 463 aaPredicted RBP11.87□□□□□ -0.51
CLN3-229ENST00000567963 KLK11Q9UBX7 282 aa11.87□□□□□ -0.51
CLN3-229ENST00000567963 NUPR2A6NF83 97 aa11.86□□□□□ -0.51
CLN3-229ENST00000567963 PGAM2P15259 253 aa11.86□□□□□ -0.51
CLN3-229ENST00000567963 CMC4P56277 68 aaPredicted RBP11.86□□□□□ -0.51
CLN3-229ENST00000567963 ZNF124Q15973 351 aa11.86□□□□□ -0.51
CLN3-229ENST00000567963 IZUMO4Q1ZYL8 232 aa11.86□□□□□ -0.51
CLN3-229ENST00000567963 FAM90A2PQ658T7 463 aa11.86□□□□□ -0.51
CLN3-229ENST00000567963 LHFPL1Q86WI0 220 aa11.86□□□□□ -0.51
CLN3-229ENST00000567963 BCL7BQ9BQE9 202 aa11.86□□□□□ -0.51
CLN3-229ENST00000567963 PI3P19957 117 aa11.85□□□□□ -0.51
CLN3-229ENST00000567963 TFPI2P48307 235 aa11.85□□□□□ -0.51
CLN3-229ENST00000567963 PIGPP57054 158 aa11.85□□□□□ -0.51
CLN3-229ENST00000567963 SPINK9Q5DT21 86 aa11.85□□□□□ -0.51
CLN3-229ENST00000567963 MZT2AQ6P582 158 aa11.85□□□□□ -0.51
CLN3-229ENST00000567963 CEMP1Q6PRD7 247 aaPredicted RBP11.85□□□□□ -0.51
CLN3-229ENST00000567963 TP53RKQ96S44 253 aa11.85□□□□□ -0.51
CLN3-229ENST00000567963 C6orf62Q9GZU0 229 aaPredicted RBP11.85□□□□□ -0.51
CLN3-229ENST00000567963 IGKV3-7A0A075B6H7 116 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 IGHV3OR16-13A0A075B7E8 117 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 IGHV3-74A0A0B4J1X5 117 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 A0A0B4J293 547 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 FAM25AB3EWG3 89 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 FAM25CB3EWG5 89 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 FAM25GB3EWG6 89 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 INS-IGF2F8WCM5 200 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 IGKV1-5P01602 117 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 CD3DP04234 171 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 P0C879 139 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 TMBIM6P55061 237 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 CTF1Q16619 201 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 RNASE12Q5GAN4 147 aaKnown RBP11.84□□□□□ -0.51
CLN3-229ENST00000567963 RNASE10Q5GAN6 216 aaKnown RBP11.84□□□□□ -0.51
CLN3-229ENST00000567963 TOMM20LQ6UXN7 152 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 DUSP18Q8NEJ0 188 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 NAA50Q9GZZ1 169 aaKnown RBP11.84□□□□□ -0.51
CLN3-229ENST00000567963 CSTL1Q9H114 145 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 BATF3Q9NR55 127 aa11.84□□□□□ -0.51
CLN3-229ENST00000567963 LY6G6CO95867 125 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 CD5P06127 495 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 SNCAP37840 140 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 NPBWR1P48145 328 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 GPR107Q5VW38 600 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 CLVS1Q8IUQ0 354 aaPredicted RBP11.83□□□□□ -0.52
CLN3-229ENST00000567963 GBGT1Q8N5D6 347 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 ARRDC1Q8N5I2 433 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 TMEM217Q8N7C4 229 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 OR52I2Q8NH67 350 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 RAB2BQ8WUD1 216 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 GINS3Q9BRX5 216 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 VSIRQ9H7M9 311 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 MTFP1Q9UDX5 166 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 KMT2AQ03164 3969 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 C3orf85A0A1B0GTC6 90 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 A6NHS1 94 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 ZNF701M0R085 212 aaPredicted RBP11.83□□□□□ -0.52
CLN3-229ENST00000567963 ST8SIA3O43173 380 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 TMEM50AO95807 157 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 IFNA17P01571 189 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 APOHP02749 345 aaPredicted RBP11.83□□□□□ -0.52
CLN3-229ENST00000567963 AKR1C2P52895 323 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 PAFAH1B2P68402 229 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 PVRIGQ6DKI7 326 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 TCF24Q7RTU0 167 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 LILRB2Q8N423 598 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 SLC35G3Q8N808 338 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 ST8SIA2Q92186 375 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 AP3S1Q92572 193 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 ABHD1Q96SE0 405 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 NDUFA13Q9P0J0 144 aa11.83□□□□□ -0.52
CLN3-229ENST00000567963 MPTX1A8MV57 137 aa11.82□□□□□ -0.52
CLN3-229ENST00000567963 ATG12O94817 140 aa11.82□□□□□ -0.52
CLN3-229ENST00000567963 ZNF182P17025 639 aaPredicted RBP11.82□□□□□ -0.52
CLN3-229ENST00000567963 TBPP20226 339 aa11.82□□□□□ -0.52
CLN3-229ENST00000567963 ZNF600Q6ZNG1 722 aa11.82□□□□□ -0.52
CLN3-229ENST00000567963 OR4D10Q8NGI6 311 aa11.82□□□□□ -0.52
CLN3-229ENST00000567963 TERB2Q8NHR7 220 aa11.82□□□□□ -0.52
CLN3-229ENST00000567963 GATAD1Q8WUU5 269 aa11.82□□□□□ -0.52
CLN3-229ENST00000567963 ZFAND3Q9H8U3 227 aa11.82□□□□□ -0.52
CLN3-229ENST00000567963 EXTL2Q9UBQ6 330 aa11.82□□□□□ -0.52
CLN3-229ENST00000567963 KLK5Q9Y337 293 aaPredicted RBP11.82□□□□□ -0.52
CLN3-229ENST00000567963 PUS1Q9Y606 427 aaKnown RBP eCLIP11.82□□□□□ -0.52
CLN3-229ENST00000567963 ETV6P41212 452 aa11.81□□□□□ -0.52
CLN3-229ENST00000567963 SUB1P53999 127 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLN3-229ENST00000567963 SP6Q3SY56 376 aa11.81□□□□□ -0.52
CLN3-229ENST00000567963 ZFAND1Q8TCF1 268 aa11.81□□□□□ -0.52
CLN3-229ENST00000567963 RARRES2Q99969 163 aa11.81□□□□□ -0.52
CLN3-229ENST00000567963 PDCD10Q9BUL8 212 aa11.81□□□□□ -0.52
CLN3-229ENST00000567963 MS4A6AQ9H2W1 248 aa11.81□□□□□ -0.52
CLN3-229ENST00000567963 COPZ2Q9P299 210 aa11.81□□□□□ -0.52
CLN3-229ENST00000567963 A0A1B0GU03 582 aa11.8□□□□□ -0.52
CLN3-229ENST00000567963 H3BMQ9 156 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms