RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 LYG2Q86SG7 212 aa11.06□□□□□ -0.64
CLN3-222ENST00000566083 DUSP18Q8NEJ0 188 aa11.06□□□□□ -0.64
CLN3-222ENST00000566083 MRGPRFQ96AM1 343 aa11.06□□□□□ -0.64
CLN3-222ENST00000566083 PDCD10Q9BUL8 212 aa11.06□□□□□ -0.64
CLN3-222ENST00000566083 DBX1A6NMT0 343 aa11.05□□□□□ -0.64
CLN3-222ENST00000566083 FAM25AB3EWG3 89 aa11.05□□□□□ -0.64
CLN3-222ENST00000566083 FAM25CB3EWG5 89 aa11.05□□□□□ -0.64
CLN3-222ENST00000566083 FAM25GB3EWG6 89 aa11.05□□□□□ -0.64
CLN3-222ENST00000566083 PGAM2P15259 253 aa11.05□□□□□ -0.64
CLN3-222ENST00000566083 ZFAND1Q8TCF1 268 aa11.05□□□□□ -0.64
CLN3-222ENST00000566083 RNF2Q99496 336 aa11.05□□□□□ -0.64
CLN3-222ENST00000566083 MAP6D1Q9H9H5 199 aa11.05□□□□□ -0.64
CLN3-222ENST00000566083 KLK5Q9Y337 293 aaPredicted RBP11.05□□□□□ -0.64
CLN3-222ENST00000566083 HYDINQ4G0P3 5121 aa11.04□□□□□ -0.64
CLN3-222ENST00000566083 A0A0J9YWU9 116 aa11.04□□□□□ -0.64
CLN3-222ENST00000566083 ZNF207O43670 478 aaKnown RBP11.04□□□□□ -0.64
CLN3-222ENST00000566083 HPGDSO60760 199 aa11.04□□□□□ -0.64
CLN3-222ENST00000566083 IGKV1-39P01597 117 aa11.04□□□□□ -0.64
CLN3-222ENST00000566083 IGKV1D-39P04432 117 aa11.04□□□□□ -0.64
CLN3-222ENST00000566083 AKR1C2P52895 323 aa11.04□□□□□ -0.64
CLN3-222ENST00000566083 PIGPP57054 158 aa11.04□□□□□ -0.64
CLN3-222ENST00000566083 SLC35G3Q8N808 338 aa11.04□□□□□ -0.64
CLN3-222ENST00000566083 CCDC71LQ8N9Z2 235 aa11.04□□□□□ -0.64
CLN3-222ENST00000566083 GATAD1Q8WUU5 269 aa11.04□□□□□ -0.64
CLN3-222ENST00000566083 PINX1Q96BK5 328 aaKnown RBP11.04□□□□□ -0.64
CLN3-222ENST00000566083 TMEM231Q9H6L2 316 aa11.04□□□□□ -0.64
CLN3-222ENST00000566083 IGHV3OR16-8A0A075B7F1 116 aa11.03□□□□□ -0.64
CLN3-222ENST00000566083 CSTL1Q9H114 145 aa11.03□□□□□ -0.64
CLN3-222ENST00000566083 ENY2Q9NPA8 101 aa11.03□□□□□ -0.64
CLN3-222ENST00000566083 COPZ2Q9P299 210 aa11.03□□□□□ -0.64
CLN3-222ENST00000566083 MTFP1Q9UDX5 166 aa11.03□□□□□ -0.64
CLN3-222ENST00000566083 TRAV2A0A0B4J234 112 aa11.02□□□□□ -0.64
CLN3-222ENST00000566083 C3orf85A0A1B0GTC6 90 aa11.02□□□□□ -0.64
CLN3-222ENST00000566083 A0A1W2PS18 150 aa11.02□□□□□ -0.64
CLN3-222ENST00000566083 MPTX1A8MV57 137 aa11.02□□□□□ -0.64
CLN3-222ENST00000566083 M0QYG6 137 aa11.02□□□□□ -0.64
CLN3-222ENST00000566083 DFFBO76075 338 aa11.02□□□□□ -0.64
CLN3-222ENST00000566083 IFNA17P01571 189 aa11.02□□□□□ -0.64
CLN3-222ENST00000566083 ZNF182P17025 639 aaPredicted RBP11.02□□□□□ -0.64
CLN3-222ENST00000566083 RPL35AP18077 110 aaKnown RBP11.02□□□□□ -0.64
CLN3-222ENST00000566083 CEMP1Q6PRD7 247 aaPredicted RBP11.02□□□□□ -0.64
CLN3-222ENST00000566083 ZNF600Q6ZNG1 722 aa11.02□□□□□ -0.64
CLN3-222ENST00000566083 LHFPL1Q86WI0 220 aa11.02□□□□□ -0.64
CLN3-222ENST00000566083 TERB2Q8NHR7 220 aa11.02□□□□□ -0.64
CLN3-222ENST00000566083 LINC00476Q8WZB0 136 aa11.02□□□□□ -0.64
CLN3-222ENST00000566083 RRNAD1Q96FB5 475 aaKnown RBP11.02□□□□□ -0.64
CLN3-222ENST00000566083 KLK11Q9UBX7 282 aa11.02□□□□□ -0.64
CLN3-222ENST00000566083 TAS2R19P59542 299 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 SSBP1Q04837 148 aaKnown RBP11.01□□□□□ -0.65
CLN3-222ENST00000566083 PMS2P11Q13670 270 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 TRIM16LQ309B1 348 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 FAM90A2PQ658T7 463 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 FAM219AQ8IW50 185 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 CACFD1Q9UGQ2 172 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 DNASE2O00115 360 aaPredicted RBP11.01□□□□□ -0.65
CLN3-222ENST00000566083 CD3DP04234 171 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 RPL5P46777 297 aaKnown RBP11.01□□□□□ -0.65
CLN3-222ENST00000566083 MRPS10P82664 201 aaKnown RBP11.01□□□□□ -0.65
CLN3-222ENST00000566083 PVRIGQ6DKI7 326 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 TOMM20LQ6UXN7 152 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 TCF24Q7RTU0 167 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 NARS2Q96I59 477 aaKnown RBP11.01□□□□□ -0.65
CLN3-222ENST00000566083 TP53RKQ96S44 253 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 MFFQ9GZY8 342 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 VSIRQ9H7M9 311 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 EXTL2Q9UBQ6 330 aa11.01□□□□□ -0.65
CLN3-222ENST00000566083 TRAV30A0A087WSZ9 112 aa11□□□□□ -0.65
CLN3-222ENST00000566083 A0A0B4J293 547 aa11□□□□□ -0.65
CLN3-222ENST00000566083 ST8SIA3O43173 380 aa11□□□□□ -0.65
CLN3-222ENST00000566083 GABARAPO95166 117 aa11□□□□□ -0.65
CLN3-222ENST00000566083 TMEM50AO95807 157 aa11□□□□□ -0.65
CLN3-222ENST00000566083 IGKV1-5P01602 117 aa11□□□□□ -0.65
CLN3-222ENST00000566083 CD74P04233 296 aa11□□□□□ -0.65
CLN3-222ENST00000566083 P0C879 139 aa11□□□□□ -0.65
CLN3-222ENST00000566083 TFPI2P48307 235 aa11□□□□□ -0.65
CLN3-222ENST00000566083 HOXA1P49639 335 aaPredicted RBP11□□□□□ -0.65
CLN3-222ENST00000566083 APRG1Q8IVJ8 170 aa11□□□□□ -0.65
CLN3-222ENST00000566083 TMEM229BQ8NBD8 167 aa11□□□□□ -0.65
CLN3-222ENST00000566083 OR52I2Q8NH67 350 aa11□□□□□ -0.65
CLN3-222ENST00000566083 RNASE11Q8TAA1 199 aaKnown RBP11□□□□□ -0.65
CLN3-222ENST00000566083 RARRES2Q99969 163 aa11□□□□□ -0.65
CLN3-222ENST00000566083 RABL2AQ9UBK7 228 aaPredicted RBP11□□□□□ -0.65
CLN3-222ENST00000566083 RABL2BQ9UNT1 228 aa11□□□□□ -0.65
CLN3-222ENST00000566083 IGHV3-49A0A0A0MS15 119 aa10.99□□□□□ -0.65
CLN3-222ENST00000566083 RAB3DO95716 219 aa10.99□□□□□ -0.65
CLN3-222ENST00000566083 LY6G6CO95867 125 aa10.99□□□□□ -0.65
CLN3-222ENST00000566083 PI3P19957 117 aa10.99□□□□□ -0.65
CLN3-222ENST00000566083 NPPCP23582 126 aa10.99□□□□□ -0.65
CLN3-222ENST00000566083 UCP1P25874 307 aa10.99□□□□□ -0.65
CLN3-222ENST00000566083 MEF2DQ14814 521 aa10.99□□□□□ -0.65
CLN3-222ENST00000566083 SURF2Q15527 256 aaPredicted RBP10.99□□□□□ -0.65
CLN3-222ENST00000566083 CTF1Q16619 201 aa10.99□□□□□ -0.65
CLN3-222ENST00000566083 OR52E5Q8NH55 327 aa10.99□□□□□ -0.65
CLN3-222ENST00000566083 PUS1Q9Y606 427 aaKnown RBP eCLIP10.99□□□□□ -0.65
CLN3-222ENST00000566083 IGKV3-7A0A075B6H7 116 aa10.98□□□□□ -0.65
CLN3-222ENST00000566083 RPS10-NUDT3A0A1W2PQS6 291 aa10.98□□□□□ -0.65
CLN3-222ENST00000566083 GABARAPH6UMI1 98 aa10.98□□□□□ -0.65
CLN3-222ENST00000566083 CLN5O75503 358 aa10.98□□□□□ -0.65
CLN3-222ENST00000566083 IGHV3-48P01763 117 aa10.98□□□□□ -0.65
CLN3-222ENST00000566083 RNASE2P10153 161 aaKnown RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms