RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 RORCP51449 518 aa13.83□□□□□ -0.2
CLN3-218ENST00000565688 RND3P61587 244 aa13.83□□□□□ -0.2
CLN3-218ENST00000565688 VBP1P61758 197 aa13.83□□□□□ -0.2
CLN3-218ENST00000565688 PAFAH1B2P68402 229 aa13.83□□□□□ -0.2
CLN3-218ENST00000565688 EWSR1Q01844 656 aaKnown RBP eCLIP13.83□□□□□ -0.2
CLN3-218ENST00000565688 MZT2AQ6P582 158 aa13.83□□□□□ -0.2
CLN3-218ENST00000565688 CEMP1Q6PRD7 247 aaPredicted RBP13.83□□□□□ -0.2
CLN3-218ENST00000565688 PINX1Q96BK5 328 aaKnown RBP13.83□□□□□ -0.2
CLN3-218ENST00000565688 KLK5Q9Y337 293 aaPredicted RBP13.83□□□□□ -0.2
CLN3-218ENST00000565688 M0QYG6 137 aa13.82□□□□□ -0.2
CLN3-218ENST00000565688 ATG12O94817 140 aa13.82□□□□□ -0.2
CLN3-218ENST00000565688 SNCAP37840 140 aa13.82□□□□□ -0.2
CLN3-218ENST00000565688 NPBWR1P48145 328 aa13.82□□□□□ -0.2
CLN3-218ENST00000565688 RNASE10Q5GAN6 216 aaKnown RBP13.82□□□□□ -0.2
CLN3-218ENST00000565688 APRG1Q8IVJ8 170 aa13.82□□□□□ -0.2
CLN3-218ENST00000565688 DUSP18Q8NEJ0 188 aa13.82□□□□□ -0.2
CLN3-218ENST00000565688 CSTL1Q9H114 145 aa13.82□□□□□ -0.2
CLN3-218ENST00000565688 IGHV3-49A0A0A0MS15 119 aa13.81□□□□□ -0.2
CLN3-218ENST00000565688 MPTX1A8MV57 137 aa13.81□□□□□ -0.2
CLN3-218ENST00000565688 INS-IGF2F8WCM5 200 aa13.81□□□□□ -0.2
CLN3-218ENST00000565688 LY6G6CO95867 125 aa13.81□□□□□ -0.2
CLN3-218ENST00000565688 IGHV3-48P01763 117 aa13.81□□□□□ -0.2
CLN3-218ENST00000565688 PGAM2P15259 253 aa13.81□□□□□ -0.2
CLN3-218ENST00000565688 TBPP20226 339 aa13.81□□□□□ -0.2
CLN3-218ENST00000565688 TFPI2P48307 235 aa13.81□□□□□ -0.2
CLN3-218ENST00000565688 FAM90A2PQ658T7 463 aa13.81□□□□□ -0.2
CLN3-218ENST00000565688 ARRDC1Q8N5I2 433 aa13.81□□□□□ -0.2
CLN3-218ENST00000565688 GATAD1Q8WUU5 269 aa13.81□□□□□ -0.2
CLN3-218ENST00000565688 AP3S1Q92572 193 aa13.81□□□□□ -0.2
CLN3-218ENST00000565688 FAM25AB3EWG3 89 aa13.8□□□□□ -0.2
CLN3-218ENST00000565688 FAM25CB3EWG5 89 aa13.8□□□□□ -0.2
CLN3-218ENST00000565688 FAM25GB3EWG6 89 aa13.8□□□□□ -0.2
CLN3-218ENST00000565688 AKR1C2P52895 323 aa13.8□□□□□ -0.2
CLN3-218ENST00000565688 SUB1P53999 127 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLN3-218ENST00000565688 PIGPP57054 158 aa13.8□□□□□ -0.2
CLN3-218ENST00000565688 LHFPL1Q86WI0 220 aa13.8□□□□□ -0.2
CLN3-218ENST00000565688 SLC35G3Q8N808 338 aa13.8□□□□□ -0.2
CLN3-218ENST00000565688 PDCD10Q9BUL8 212 aa13.8□□□□□ -0.2
CLN3-218ENST00000565688 IGKV3-7A0A075B6H7 116 aa13.79□□□□□ -0.2
CLN3-218ENST00000565688 CORTO00230 105 aa13.79□□□□□ -0.2
CLN3-218ENST00000565688 IFNA17P01571 189 aa13.79□□□□□ -0.2
CLN3-218ENST00000565688 IGKV1-5P01602 117 aa13.79□□□□□ -0.2
CLN3-218ENST00000565688 TOMM20LQ6UXN7 152 aa13.79□□□□□ -0.2
CLN3-218ENST00000565688 ZNF600Q6ZNG1 722 aa13.79□□□□□ -0.2
CLN3-218ENST00000565688 TCF24Q7RTU0 167 aa13.79□□□□□ -0.2
CLN3-218ENST00000565688 KLK11Q9UBX7 282 aa13.79□□□□□ -0.2
CLN3-218ENST00000565688 IGHV3OR16-13A0A075B7E8 117 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 IGHV3-74A0A0B4J1X5 117 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 A0A0B4J293 547 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 C3orf85A0A1B0GTC6 90 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 CD3DP04234 171 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 P0C879 139 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 PI3P19957 117 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 IZUMO4Q1ZYL8 232 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 SPINK9Q5DT21 86 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 GBGT1Q8N5D6 347 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 ZFAND1Q8TCF1 268 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 C15orf40Q8WUR7 153 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 TP53RKQ96S44 253 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 TMEM231Q9H6L2 316 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 VSIRQ9H7M9 311 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 MTFP1Q9UDX5 166 aa13.78□□□□□ -0.2
CLN3-218ENST00000565688 TRAV2A0A0B4J234 112 aa13.77□□□□□ -0.21
CLN3-218ENST00000565688 ST8SIA3O43173 380 aa13.77□□□□□ -0.21
CLN3-218ENST00000565688 B3GALNT1O75752 331 aa13.77□□□□□ -0.21
CLN3-218ENST00000565688 DFFBO76075 338 aa13.77□□□□□ -0.21
CLN3-218ENST00000565688 ZNF124Q15973 351 aa13.77□□□□□ -0.21
CLN3-218ENST00000565688 RNASE12Q5GAN4 147 aaKnown RBP13.77□□□□□ -0.21
CLN3-218ENST00000565688 PVRIGQ6DKI7 326 aa13.77□□□□□ -0.21
CLN3-218ENST00000565688 CCDC71LQ8N9Z2 235 aa13.77□□□□□ -0.21
CLN3-218ENST00000565688 OR52I2Q8NH67 350 aa13.77□□□□□ -0.21
CLN3-218ENST00000565688 ST8SIA2Q92186 375 aa13.77□□□□□ -0.21
CLN3-218ENST00000565688 RARRES2Q99969 163 aa13.77□□□□□ -0.21
CLN3-218ENST00000565688 COPZ2Q9P299 210 aa13.77□□□□□ -0.21
CLN3-218ENST00000565688 PUS1Q9Y606 427 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLN3-218ENST00000565688 DNASE2O00115 360 aaPredicted RBP13.76□□□□□ -0.21
CLN3-218ENST00000565688 SCGB2A1O75556 95 aa13.76□□□□□ -0.21
CLN3-218ENST00000565688 TMEM50AO95807 157 aa13.76□□□□□ -0.21
CLN3-218ENST00000565688 ZNF182P17025 639 aaPredicted RBP13.76□□□□□ -0.21
CLN3-218ENST00000565688 TRIM16LQ309B1 348 aa13.76□□□□□ -0.21
CLN3-218ENST00000565688 TERB2Q8NHR7 220 aa13.76□□□□□ -0.21
CLN3-218ENST00000565688 PHLDA1Q8WV24 401 aaPredicted RBP13.76□□□□□ -0.21
CLN3-218ENST00000565688 RRNAD1Q96FB5 475 aaKnown RBP13.76□□□□□ -0.21
CLN3-218ENST00000565688 MS4A6AQ9H2W1 248 aa13.76□□□□□ -0.21
CLN3-218ENST00000565688 ZFAND3Q9H8U3 227 aa13.76□□□□□ -0.21
CLN3-218ENST00000565688 ENY2Q9NPA8 101 aa13.76□□□□□ -0.21
CLN3-218ENST00000565688 EXTL2Q9UBQ6 330 aa13.76□□□□□ -0.21
CLN3-218ENST00000565688 RNASE2P10153 161 aaKnown RBP13.75□□□□□ -0.21
CLN3-218ENST00000565688 HOXA1P49639 335 aaPredicted RBP13.75□□□□□ -0.21
CLN3-218ENST00000565688 PPP5CP53041 499 aa13.75□□□□□ -0.21
CLN3-218ENST00000565688 RPL11P62913 178 aaKnown RBP13.75□□□□□ -0.21
CLN3-218ENST00000565688 MFFQ9GZY8 342 aa13.75□□□□□ -0.21
CLN3-218ENST00000565688 C11orf68Q9H3H3 251 aaKnown RBP13.75□□□□□ -0.21
CLN3-218ENST00000565688 A0A1W2PS18 150 aa13.74□□□□□ -0.21
CLN3-218ENST00000565688 GABARAPO95166 117 aa13.74□□□□□ -0.21
CLN3-218ENST00000565688 APOHP02749 345 aaPredicted RBP13.74□□□□□ -0.21
CLN3-218ENST00000565688 CD74P04233 296 aa13.74□□□□□ -0.21
CLN3-218ENST00000565688 NPPCP23582 126 aa13.74□□□□□ -0.21
CLN3-218ENST00000565688 UCP1P25874 307 aa13.74□□□□□ -0.21
CLN3-218ENST00000565688 ETV6P41212 452 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms