RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 TCTEX1D4Q5JR98 221 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 SLC25A24Q6NUK1 477 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 TEX38Q6PEX7 206 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 HAPLN4Q86UW8 402 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 RNF152Q8N8N0 203 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 OR5AU1Q8NGC0 362 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 THAP6Q8TBB0 222 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 PAIP2BQ9ULR5 123 aaKnown RBP12.92□□□□□ -0.34
VPS4A-202ENST00000562754 PMS2P5A8MQ11 134 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 ELANEP08246 267 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 OR8U8P0C7N1 319 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 METTL15P1P0C7V9 234 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 P2RY1P47900 373 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 CAV2P51636 162 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 SUB1P53999 127 aaKnown RBP eCLIP12.91□□□□□ -0.34
VPS4A-202ENST00000562754 ATP5IP56385 69 aaPredicted RBP12.91□□□□□ -0.34
VPS4A-202ENST00000562754 TPPP2P59282 170 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 KRTAP10-3P60369 221 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 AWAT1Q58HT5 328 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 HIST2H2BDQ6DRA6 164 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 OR1L6Q8NGR2 347 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 MYOZ3Q8TDC0 251 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 DCUN1D4Q92564 292 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 MISP3Q96FF7 219 aa12.91□□□□□ -0.34
VPS4A-202ENST00000562754 FXYD6-FXYD2A0A087WZ82 144 aa12.9□□□□□ -0.34
VPS4A-202ENST00000562754 PRSS46E5RG02 174 aa12.9□□□□□ -0.34
VPS4A-202ENST00000562754 K7EIM0 57 aa12.9□□□□□ -0.34
VPS4A-202ENST00000562754 RPLP1P05386 114 aaKnown RBP12.9□□□□□ -0.34
VPS4A-202ENST00000562754 HIST1H1BP16401 226 aaKnown RBP12.9□□□□□ -0.34
VPS4A-202ENST00000562754 RAB9AP51151 201 aa12.9□□□□□ -0.34
VPS4A-202ENST00000562754 RPP30P78346 268 aaKnown RBP12.9□□□□□ -0.34
VPS4A-202ENST00000562754 ARL16Q0P5N6 197 aa12.9□□□□□ -0.34
VPS4A-202ENST00000562754 KIAA0141Q14154 515 aaPredicted RBP12.9□□□□□ -0.34
VPS4A-202ENST00000562754 ETV3LQ6ZN32 361 aa12.9□□□□□ -0.34
VPS4A-202ENST00000562754 COMMD1Q8N668 190 aa12.9□□□□□ -0.34
VPS4A-202ENST00000562754 TMEM252Q8N6L7 170 aa12.9□□□□□ -0.34
VPS4A-202ENST00000562754 OR11H4Q8NGC9 324 aa12.9□□□□□ -0.34
VPS4A-202ENST00000562754 WFDC12Q8WWY7 111 aa12.9□□□□□ -0.34
VPS4A-202ENST00000562754 FNDC4Q9H6D8 234 aaPredicted RBP12.9□□□□□ -0.34
VPS4A-202ENST00000562754 SLA2Q9H6Q3 261 aa12.9□□□□□ -0.34
VPS4A-202ENST00000562754 FBXL7Q9UJT9 491 aa12.9□□□□□ -0.34
VPS4A-202ENST00000562754 IGHV3-21A0A0B4J1V1 117 aa12.89□□□□□ -0.35
VPS4A-202ENST00000562754 MFSD2BA6NFX1 497 aa12.89□□□□□ -0.35
VPS4A-202ENST00000562754 I3L2K1 104 aa12.89□□□□□ -0.35
VPS4A-202ENST00000562754 IFNA4P05014 189 aa12.89□□□□□ -0.35
VPS4A-202ENST00000562754 CD28P10747 220 aa12.89□□□□□ -0.35
VPS4A-202ENST00000562754 RAB11AP62491 216 aa12.89□□□□□ -0.35
VPS4A-202ENST00000562754 NOXA1Q86UR1 476 aa12.89□□□□□ -0.35
VPS4A-202ENST00000562754 C11orf44Q8N8P7 122 aa12.89□□□□□ -0.35
VPS4A-202ENST00000562754 NECAP1Q8NC96 275 aa12.89□□□□□ -0.35
VPS4A-202ENST00000562754 OR4X2Q8NGF9 303 aa12.89□□□□□ -0.35
VPS4A-202ENST00000562754 RNASEH2CQ8TDP1 164 aaKnown RBP12.89□□□□□ -0.35
VPS4A-202ENST00000562754 PINX1Q96BK5 328 aaKnown RBP12.89□□□□□ -0.35
VPS4A-202ENST00000562754 BSCL2Q96G97 398 aaPredicted RBP12.89□□□□□ -0.35
VPS4A-202ENST00000562754 S4R3C0 116 aa12.89□□□□□ -0.35
VPS4A-202ENST00000562754 FAM223BA6NKX1 122 aa12.88□□□□□ -0.35
VPS4A-202ENST00000562754 CORTO00230 105 aa12.88□□□□□ -0.35
VPS4A-202ENST00000562754 CYB5BO43169 146 aa12.88□□□□□ -0.35
VPS4A-202ENST00000562754 CST7O76096 145 aa12.88□□□□□ -0.35
VPS4A-202ENST00000562754 MT-CO2P00403 227 aa12.88□□□□□ -0.35
VPS4A-202ENST00000562754 EWSR1Q01844 656 aaKnown RBP eCLIP12.88□□□□□ -0.35
VPS4A-202ENST00000562754 MLANAQ16655 118 aa12.88□□□□□ -0.35
VPS4A-202ENST00000562754 C15orf32Q32M92 178 aa12.88□□□□□ -0.35
VPS4A-202ENST00000562754 OR8G2PQ6IF36 304 aa12.88□□□□□ -0.35
VPS4A-202ENST00000562754 TMEM65Q6PI78 240 aa12.88□□□□□ -0.35
VPS4A-202ENST00000562754 FAM223AQ8IWN6 122 aa12.88□□□□□ -0.35
VPS4A-202ENST00000562754 MRPL36Q9P0J6 103 aaKnown RBP12.88□□□□□ -0.35
VPS4A-202ENST00000562754 TNFSF18Q9UNG2 199 aa12.88□□□□□ -0.35
VPS4A-202ENST00000562754 RNF222A6NCQ9 220 aa12.87□□□□□ -0.35
VPS4A-202ENST00000562754 IGHV3-48P01763 117 aa12.87□□□□□ -0.35
VPS4A-202ENST00000562754 RPL12P30050 165 aaKnown RBP12.87□□□□□ -0.35
VPS4A-202ENST00000562754 OPRK1P41145 380 aa12.87□□□□□ -0.35
VPS4A-202ENST00000562754 SULT1A1P50225 295 aa12.87□□□□□ -0.35
VPS4A-202ENST00000562754 CD69Q07108 199 aa12.87□□□□□ -0.35
VPS4A-202ENST00000562754 EXOSC2Q13868 293 aaKnown RBP12.87□□□□□ -0.35
VPS4A-202ENST00000562754 ZNF491Q8N8L2 437 aa12.87□□□□□ -0.35
VPS4A-202ENST00000562754 TMEM158Q8WZ71 300 aa12.87□□□□□ -0.35
VPS4A-202ENST00000562754 SLC25A31Q9H0C2 315 aa12.87□□□□□ -0.35
VPS4A-202ENST00000562754 THYN1Q9P016 225 aa12.87□□□□□ -0.35
VPS4A-202ENST00000562754 FBN1P35555 2871 aaKnown RBP12.86□□□□□ -0.35
VPS4A-202ENST00000562754 IGHV3-11P01762 117 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 IGHV3-23P01764 117 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 C1QBP02746 253 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 NHLH2Q02577 135 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 ATP5G2Q06055 141 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 C18orf65Q6ZTR6 163 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 ACOT7LQ6ZUV0 252 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 SLC16A13Q7RTY0 426 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 ZNF546Q86UE3 836 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 STX12Q86Y82 276 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 TMEM217Q8N7C4 229 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 SCARB1Q8WTV0 552 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 USMG5Q96IX5 58 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 AQP10Q96PS8 301 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 CITED2Q99967 270 aaPredicted RBP12.86□□□□□ -0.35
VPS4A-202ENST00000562754 GNB4Q9HAV0 340 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 HSPB11Q9Y547 144 aa12.86□□□□□ -0.35
VPS4A-202ENST00000562754 F8W735 103 aaPredicted RBP12.85□□□□□ -0.35
VPS4A-202ENST00000562754 ARPC5O15511 151 aa12.85□□□□□ -0.35
VPS4A-202ENST00000562754 SLC38A11Q08AI6 406 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms