RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 MT-CO2P00403 227 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 C8orf88P0DMB2 117 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 ADMP35318 185 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 SNCAP37840 140 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 MFAP4P55083 255 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 ELLP55199 621 aaPredicted RBP11.78□□□□□ -0.52
VPS39-203ENST00000561797 HAGHQ16775 308 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 DEFB125Q8N687 156 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 ZNF114Q8NC26 417 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 LHFPL5Q8TAF8 219 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 GLYATL2Q8WU03 294 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 TMEM190Q8WZ59 177 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 MARC2Q969Z3 335 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 TM2D3Q9BRN9 247 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 MCUBQ9NWR8 336 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 SCP2D1Q9UJQ7 156 aa11.78□□□□□ -0.52
VPS39-203ENST00000561797 CRYM-AS1A6NIL9 109 aa11.77□□□□□ -0.53
VPS39-203ENST00000561797 OR11H12B2RN74 326 aa11.77□□□□□ -0.53
VPS39-203ENST00000561797 NDUFA4O00483 81 aa11.77□□□□□ -0.53
VPS39-203ENST00000561797 CDS2O95674 445 aa11.77□□□□□ -0.53
VPS39-203ENST00000561797 CTSGP08311 255 aa11.77□□□□□ -0.53
VPS39-203ENST00000561797 HOXA1P49639 335 aaPredicted RBP11.77□□□□□ -0.53
VPS39-203ENST00000561797 DHODHQ02127 395 aa11.77□□□□□ -0.53
VPS39-203ENST00000561797 PYDC2Q56P42 97 aa11.77□□□□□ -0.53
VPS39-203ENST00000561797 Q6ZRM9 215 aa11.77□□□□□ -0.53
VPS39-203ENST00000561797 RBPMS2Q6ZRY4 209 aaKnown RBP11.77□□□□□ -0.53
VPS39-203ENST00000561797 SELENOHQ8IZQ5 122 aaKnown RBP11.77□□□□□ -0.53
VPS39-203ENST00000561797 ATP6V0BQ99437 205 aa11.77□□□□□ -0.53
VPS39-203ENST00000561797 ENY2Q9NPA8 101 aa11.77□□□□□ -0.53
VPS39-203ENST00000561797 NUPL2O15504 423 aaKnown RBP11.76□□□□□ -0.53
VPS39-203ENST00000561797 S100A5P33763 92 aa11.76□□□□□ -0.53
VPS39-203ENST00000561797 TMEM268Q5VZI3 342 aa11.76□□□□□ -0.53
VPS39-203ENST00000561797 SLC16A13Q7RTY0 426 aa11.76□□□□□ -0.53
VPS39-203ENST00000561797 OR52B4Q8NGK2 314 aa11.76□□□□□ -0.53
VPS39-203ENST00000561797 RBPMSQ93062 196 aaKnown RBP11.76□□□□□ -0.53
VPS39-203ENST00000561797 SRD5A3Q9H8P0 318 aa11.76□□□□□ -0.53
VPS39-203ENST00000561797 DAZ1Q9NQZ3 744 aaKnown RBP11.76□□□□□ -0.53
VPS39-203ENST00000561797 GAR1Q9NY12 217 aaKnown RBP11.76□□□□□ -0.53
VPS39-203ENST00000561797 GNG7O60262 68 aa11.75□□□□□ -0.53
VPS39-203ENST00000561797 YIF1AO95070 293 aa11.75□□□□□ -0.53
VPS39-203ENST00000561797 AKR1C4P17516 323 aa11.75□□□□□ -0.53
VPS39-203ENST00000561797 SUB1P53999 127 aaKnown RBP eCLIP11.75□□□□□ -0.53
VPS39-203ENST00000561797 FAM219AQ8IW50 185 aa11.75□□□□□ -0.53
VPS39-203ENST00000561797 TMEM230Q96A57 120 aa11.75□□□□□ -0.53
VPS39-203ENST00000561797 GPR146Q96CH1 333 aa11.75□□□□□ -0.53
VPS39-203ENST00000561797 SCGB3A2Q96PL1 93 aa11.75□□□□□ -0.53
VPS39-203ENST00000561797 TXN2Q99757 166 aa11.75□□□□□ -0.53
VPS39-203ENST00000561797 SPATA25Q9BR10 227 aa11.75□□□□□ -0.53
VPS39-203ENST00000561797 RBM38Q9H0Z9 239 aaKnown RBP11.75□□□□□ -0.53
VPS39-203ENST00000561797 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.75□□□□□ -0.53
VPS39-203ENST00000561797 PRR13Q9NZ81 148 aa11.75□□□□□ -0.53
VPS39-203ENST00000561797 KCNIP3Q9Y2W7 256 aa11.75□□□□□ -0.53
VPS39-203ENST00000561797 TRAV25A0A0B4J276 109 aa11.74□□□□□ -0.53
VPS39-203ENST00000561797 RBMY1BA6NDE4 496 aaKnown RBP11.74□□□□□ -0.53
VPS39-203ENST00000561797 RBMY1EA6NEQ0 496 aaKnown RBP11.74□□□□□ -0.53
VPS39-203ENST00000561797 INS-IGF2F8WCM5 200 aa11.74□□□□□ -0.53
VPS39-203ENST00000561797 RBMY1DP0C7P1 496 aaKnown RBP11.74□□□□□ -0.53
VPS39-203ENST00000561797 RNASE2P10153 161 aaKnown RBP11.74□□□□□ -0.53
VPS39-203ENST00000561797 RELQ04864 619 aaPredicted RBP11.74□□□□□ -0.53
VPS39-203ENST00000561797 ZNF414Q96IQ9 312 aa11.74□□□□□ -0.53
VPS39-203ENST00000561797 CACNG5Q9UF02 275 aa11.74□□□□□ -0.53
VPS39-203ENST00000561797 V9GYH0 126 aa11.74□□□□□ -0.53
VPS39-203ENST00000561797 K7EMT4 169 aa11.73□□□□□ -0.53
VPS39-203ENST00000561797 FCGR2BP31994 310 aaPredicted RBP11.73□□□□□ -0.53
VPS39-203ENST00000561797 FAUP35544 74 aaKnown RBP11.73□□□□□ -0.53
VPS39-203ENST00000561797 SPCS3P61009 180 aa11.73□□□□□ -0.53
VPS39-203ENST00000561797 KLF9Q13886 244 aaPredicted RBP11.73□□□□□ -0.53
VPS39-203ENST00000561797 TMEM187Q14656 261 aa11.73□□□□□ -0.53
VPS39-203ENST00000561797 ZNF79Q15937 498 aa11.73□□□□□ -0.53
VPS39-203ENST00000561797 ANKRD55Q3KP44 614 aa11.73□□□□□ -0.53
VPS39-203ENST00000561797 LINC00322Q6ZN03 302 aaPredicted RBP11.73□□□□□ -0.53
VPS39-203ENST00000561797 TOMM5Q8N4H5 51 aa11.73□□□□□ -0.53
VPS39-203ENST00000561797 DUSP18Q8NEJ0 188 aa11.73□□□□□ -0.53
VPS39-203ENST00000561797 TRIM63Q969Q1 353 aa11.73□□□□□ -0.53
VPS39-203ENST00000561797 RETNQ9HD89 108 aa11.73□□□□□ -0.53
VPS39-203ENST00000561797 TENM3Q9P273 2699 aa11.73□□□□□ -0.53
VPS39-203ENST00000561797 TMEM56-RWDD3S4R434 201 aa11.73□□□□□ -0.53
VPS39-203ENST00000561797 IGHV3-49A0A0A0MS15 119 aa11.72□□□□□ -0.53
VPS39-203ENST00000561797 C15orf62A8K5M9 175 aa11.72□□□□□ -0.53
VPS39-203ENST00000561797 CORTO00230 105 aa11.72□□□□□ -0.53
VPS39-203ENST00000561797 NXPH3O95157 252 aa11.72□□□□□ -0.53
VPS39-203ENST00000561797 NPBWR1P48145 328 aa11.72□□□□□ -0.53
VPS39-203ENST00000561797 MLANAQ16655 118 aa11.72□□□□□ -0.53
VPS39-203ENST00000561797 LAMTOR1Q6IAA8 161 aa11.72□□□□□ -0.53
VPS39-203ENST00000561797 HEYLQ9NQ87 328 aaPredicted RBP11.72□□□□□ -0.53
VPS39-203ENST00000561797 SMPXQ9UHP9 88 aa11.72□□□□□ -0.53
VPS39-203ENST00000561797 CEBPZOSA8MTT3 80 aa11.71□□□□□ -0.53
VPS39-203ENST00000561797 C3orf84H3BNL1 204 aa11.71□□□□□ -0.53
VPS39-203ENST00000561797 OPRK1P41145 380 aa11.71□□□□□ -0.53
VPS39-203ENST00000561797 AP3S2P59780 193 aa11.71□□□□□ -0.53
VPS39-203ENST00000561797 SUPT4H1P63272 117 aaKnown RBP11.71□□□□□ -0.53
VPS39-203ENST00000561797 CCDC190Q86UF4 302 aa11.71□□□□□ -0.53
VPS39-203ENST00000561797 TMEM116Q8NCL8 245 aa11.71□□□□□ -0.53
VPS39-203ENST00000561797 OR52E5Q8NH55 327 aa11.71□□□□□ -0.53
VPS39-203ENST00000561797 MUC7Q8TAX7 377 aa11.71□□□□□ -0.53
VPS39-203ENST00000561797 GALNT14Q96FL9 552 aa11.71□□□□□ -0.53
VPS39-203ENST00000561797 CITED4Q96RK1 184 aa11.71□□□□□ -0.53
VPS39-203ENST00000561797 SPAG8Q99932 426 aaPredicted RBP11.71□□□□□ -0.53
VPS39-203ENST00000561797 UBQLN2Q9UHD9 624 aa11.71□□□□□ -0.53
VPS39-203ENST00000561797 IGHV3OR16-13A0A075B7E8 117 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms