RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 SMAD7O15105 426 aaKnown RBP16.87■□□□□ 0.29
CLN3-209ENST00000561689 FBP1P09467 338 aa16.87■□□□□ 0.29
CLN3-209ENST00000561689 MFAP2P55001 183 aa16.87■□□□□ 0.29
CLN3-209ENST00000561689 NDPQ00604 133 aa16.87■□□□□ 0.29
CLN3-209ENST00000561689 C22orf15Q8WYQ4 148 aa16.87■□□□□ 0.29
CLN3-209ENST00000561689 RASL11BQ9BPW5 248 aa16.87■□□□□ 0.29
CLN3-209ENST00000561689 NPVFQ9HCQ7 196 aa16.87■□□□□ 0.29
CLN3-209ENST00000561689 PARP11Q9NR21 331 aa16.87■□□□□ 0.29
CLN3-209ENST00000561689 RAB19A4D1S5 217 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 CD69Q07108 199 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 ATRAIDQ6UW56 229 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 ZNF709Q8N972 641 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 ARPC1AQ92747 370 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 CSPG4Q6UVK1 2322 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 IGHV3-48P01763 117 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 APOC3P02656 99 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 SERF2P84101 59 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 GAMTQ14353 236 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 CENPVQ7Z7K6 275 aaPredicted RBP16.86■□□□□ 0.29
CLN3-209ENST00000561689 BCL6BQ8N143 479 aaPredicted RBP16.86■□□□□ 0.29
CLN3-209ENST00000561689 ZNF114Q8NC26 417 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 MISP3Q96FF7 219 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 NARS2Q96I59 477 aaKnown RBP16.86■□□□□ 0.29
CLN3-209ENST00000561689 FOXC2Q99958 501 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 TIMM9Q9Y5J7 89 aa16.86■□□□□ 0.29
CLN3-209ENST00000561689 TEX15Q9BXT5 2789 aa16.85■□□□□ 0.29
CLN3-209ENST00000561689 MDFIC2A0A1B0GVS7 189 aa16.85■□□□□ 0.29
CLN3-209ENST00000561689 OPRK1P41145 380 aa16.85■□□□□ 0.29
CLN3-209ENST00000561689 OR2T6Q8NHC8 308 aa16.85■□□□□ 0.29
CLN3-209ENST00000561689 RNASEH2CQ8TDP1 164 aaKnown RBP16.85■□□□□ 0.29
CLN3-209ENST00000561689 MGST2Q99735 147 aa16.85■□□□□ 0.29
CLN3-209ENST00000561689 FNDC4Q9H6D8 234 aaPredicted RBP16.85■□□□□ 0.29
CLN3-209ENST00000561689 RPRMQ9NS64 109 aa16.85■□□□□ 0.29
CLN3-209ENST00000561689 LSM4Q9Y4Z0 139 aaKnown RBP16.85■□□□□ 0.29
CLN3-209ENST00000561689 IGHV7-81A0A0B4J1V7 117 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 SH2D7A6NKC9 451 aaPredicted RBP16.84■□□□□ 0.29
CLN3-209ENST00000561689 H3BUX3 64 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 M6PRP20645 277 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 ACSM6Q6P461 480 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 SLC16A13Q7RTY0 426 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 OR1P1Q8NH06 330 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 HSPB9Q9BQS6 159 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 SRSF8Q9BRL6 282 aaKnown RBP16.84■□□□□ 0.29
CLN3-209ENST00000561689 SLC25A33Q9BSK2 321 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 F11RQ9Y624 299 aaKnown RBP16.84■□□□□ 0.29
CLN3-209ENST00000561689 A0A1B0GV50 99 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 BTN1A1Q13410 526 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 LY6EQ16553 131 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 TEPPQ6URK8 271 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 UQCC3Q6UW78 93 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 RBM14Q96PK6 669 aaKnown RBP16.84■□□□□ 0.29
CLN3-209ENST00000561689 TMEM231Q9H6L2 316 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 DMRT1Q9Y5R6 373 aa16.84■□□□□ 0.29
CLN3-209ENST00000561689 C17orf112F2Z3M2 114 aa16.83■□□□□ 0.28
CLN3-209ENST00000561689 MPDU1O75352 247 aa16.83■□□□□ 0.28
CLN3-209ENST00000561689 HLA-DRB1P01911 266 aa16.83■□□□□ 0.28
CLN3-209ENST00000561689 GPX4P36969 197 aaPredicted RBP16.83■□□□□ 0.28
CLN3-209ENST00000561689 FFAR4Q5NUL3 377 aa16.83■□□□□ 0.28
CLN3-209ENST00000561689 NANPQ8TBE9 248 aa16.83■□□□□ 0.28
CLN3-209ENST00000561689 CACNG8Q8WXS5 425 aa16.83■□□□□ 0.28
CLN3-209ENST00000561689 WNT10AQ9GZT5 417 aa16.83■□□□□ 0.28
CLN3-209ENST00000561689 FNDC10F2Z333 226 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 AGPAT2O15120 278 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 ADCYAP1P18509 176 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 PVRIGQ6DKI7 326 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 C5orf56Q8N8D9 126 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 ACY3Q96HD9 319 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 GGTLC1Q9BX51 225 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 TMEM218A2RU14 115 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 DEFA4P12838 97 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 CTRB1P17538 263 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 RAB2AP61019 212 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 DEFB112Q30KQ8 113 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 TMEM41BQ5BJD5 291 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 ASPHD1Q5U4P2 390 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 CTRB2Q6GPI1 263 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 MOB4Q9Y3A3 225 aa16.82■□□□□ 0.28
CLN3-209ENST00000561689 IGKV1OR2-108A0A075B7D4 117 aa16.81■□□□□ 0.28
CLN3-209ENST00000561689 IGHV3-21A0A0B4J1V1 117 aa16.81■□□□□ 0.28
CLN3-209ENST00000561689 EGR2P11161 476 aaPredicted RBP16.81■□□□□ 0.28
CLN3-209ENST00000561689 TMEM144Q7Z5S9 345 aa16.81■□□□□ 0.28
CLN3-209ENST00000561689 LFNGQ8NES3 379 aa16.81■□□□□ 0.28
CLN3-209ENST00000561689 LYPD6BQ8NI32 183 aa16.81■□□□□ 0.28
CLN3-209ENST00000561689 SLC35E1Q96K37 410 aa16.81■□□□□ 0.28
CLN3-209ENST00000561689 MRPL36Q9P0J6 103 aaKnown RBP16.81■□□□□ 0.28
CLN3-209ENST00000561689 AKAP9Q99996 3911 aa16.81■□□□□ 0.28
CLN3-209ENST00000561689 TSPAN15O95858 294 aa16.8■□□□□ 0.28
CLN3-209ENST00000561689 FSHBP01225 129 aa16.8■□□□□ 0.28
CLN3-209ENST00000561689 BPIFB3P59826 476 aa16.8■□□□□ 0.28
CLN3-209ENST00000561689 DEFA5Q01523 94 aa16.8■□□□□ 0.28
CLN3-209ENST00000561689 MIC13Q5XKP0 118 aa16.8■□□□□ 0.28
CLN3-209ENST00000561689 IL34Q6ZMJ4 242 aa16.8■□□□□ 0.28
CLN3-209ENST00000561689 EIF3GO75821 320 aaKnown RBP eCLIP16.8■□□□□ 0.28
CLN3-209ENST00000561689 H2AFB1P0C5Y9 115 aa16.8■□□□□ 0.28
CLN3-209ENST00000561689 DPPA3Q6W0C5 159 aa16.8■□□□□ 0.28
CLN3-209ENST00000561689 A6NDX4 124 aa16.79■□□□□ 0.28
CLN3-209ENST00000561689 LINC01548A6NM66 108 aa16.79■□□□□ 0.28
CLN3-209ENST00000561689 AMY1AP04745 511 aa16.79■□□□□ 0.28
CLN3-209ENST00000561689 FLNAP21333 2647 aaKnown RBP16.79■□□□□ 0.28
CLN3-209ENST00000561689 RAB31Q13636 194 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms