RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 HMGB3O15347 200 aaKnown RBP0.96□□□□□ -2.26
VPS13C-207ENST00000558919 ATG12O94817 140 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 ZNF682O95780 498 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 IGHV3-7P01780 117 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 LGALS1P09382 135 aaKnown RBP0.96□□□□□ -2.26
VPS13C-207ENST00000558919 SULT1A3P0DMM9 295 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 SULT1A4P0DMN0 295 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 RPL28P46779 137 aaKnown RBP0.96□□□□□ -2.26
VPS13C-207ENST00000558919 EIF2B2P49770 351 aaKnown RBP0.96□□□□□ -2.26
VPS13C-207ENST00000558919 RAB14P61106 215 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 ERHP84090 104 aaKnown RBP0.96□□□□□ -2.26
VPS13C-207ENST00000558919 MOGQ16653 247 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 ARHGAP11BQ3KRB8 267 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 SPANXN3Q5MJ09 141 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 IBA57Q5T440 356 aaKnown RBP0.96□□□□□ -2.26
VPS13C-207ENST00000558919 Q6ZTI0 123 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 GOLT1AQ6ZVE7 132 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 OR4X2Q8NGF9 303 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 SLC25A40Q8TBP6 338 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 H1FXQ92522 213 aaKnown RBP0.96□□□□□ -2.26
VPS13C-207ENST00000558919 SLC7A6Q92536 515 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 OR8D2Q9GZM6 311 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 SLC39A9Q9NUM3 307 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 TVP23BQ9NYZ1 205 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 ATPIF1Q9UII2 106 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 CPAMD8Q8IZJ3 1885 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 RP1L1Q8IWN7 2480 aaPredicted RBP0.96□□□□□ -2.26
VPS13C-207ENST00000558919 FN1P02751 2386 aaKnown RBP0.96□□□□□ -2.26
VPS13C-207ENST00000558919 EIF3AQ14152 1382 aaKnown RBP0.96□□□□□ -2.26
VPS13C-207ENST00000558919 ROBO3Q96MS0 1386 aa0.96□□□□□ -2.26
VPS13C-207ENST00000558919 IGHV3-64A0A075B6Q5 118 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 TRAV7A0A075B6U4 112 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 IGKV1D-43A0A0B4J1Z2 117 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 TRAPPC13A5PLN9 417 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 ARRDC5A6NEK1 342 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 RFPL4AA6NLU0 287 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 RFPL4AL1F8VTS6 287 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 H7C2G1 150 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 J3QRK9 145 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 IFNA1P01562 189 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 IGKV1-5P01602 117 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 PPBPP02775 128 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 FABP1P07148 127 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 SMIM17P0DL12 118 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 CYBAP13498 195 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 CCL5P13501 91 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 RPS4Y1P22090 263 aaKnown RBP0.95□□□□□ -2.26
VPS13C-207ENST00000558919 NFYAP23511 347 aaPredicted RBP0.95□□□□□ -2.26
VPS13C-207ENST00000558919 S100A4P26447 101 aaKnown RBP0.95□□□□□ -2.26
VPS13C-207ENST00000558919 CASP1P29466 404 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 DEFA3P59666 94 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 TMEM258P61165 79 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 HSPE1P61604 102 aaKnown RBP0.95□□□□□ -2.26
VPS13C-207ENST00000558919 RELAQ04206 551 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 TPRXLQ17RH7 258 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 TRIQKQ629K1 86 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 Q6Q795 121 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 LYG2Q86SG7 212 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 BPIFA4PQ86YQ2 179 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 DYNAPQ8N1N2 210 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 RPP25LQ8N5L8 163 aaKnown RBP0.95□□□□□ -2.26
VPS13C-207ENST00000558919 DEFB119Q8N690 84 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 OR13C6PQ8NH95 151 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 NEK7Q8TDX7 302 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 RASSF5Q8WWW0 418 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 DNAJC9Q8WXX5 260 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 GPR146Q96CH1 333 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 C2orf50Q96LR7 162 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 SCGB3A1Q96QR1 104 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 GINS4Q9BRT9 223 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 DOHHQ9BU89 302 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 VCX3BQ9H321 246 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 PARVBQ9HBI1 364 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 PYCARDQ9ULZ3 195 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 CYSLTR1Q9Y271 337 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 UTP11Q9Y3A2 253 aaKnown RBP0.95□□□□□ -2.26
VPS13C-207ENST00000558919 MYH11P35749 1972 aa0.95□□□□□ -2.26
VPS13C-207ENST00000558919 FLG2Q5D862 2391 aaPredicted RBP0.94□□□□□ -2.26
VPS13C-207ENST00000558919 HEATR5AQ86XA9 2040 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 PXDNLA1KZ92 1463 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 KMT2BQ9UMN6 2715 aaPredicted RBP0.94□□□□□ -2.26
VPS13C-207ENST00000558919 IGHV1-18A0A0C4DH31 117 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 ZNF860A6NHJ4 632 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 CLDN25C9JDP6 229 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 G3V2T6 193 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 J3QQQ9 107 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 CIAO1O76071 339 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 NDUFC2O95298 119 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 IFNA7P01567 189 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 OR4E1P0C645 316 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 DEFA4P12838 97 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 EVX1P49640 407 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 TCTAP57738 103 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 RPL26P61254 145 aaKnown RBP0.94□□□□□ -2.26
VPS13C-207ENST00000558919 AKR1C8PQ5T2L2 129 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 LYRM7Q5U5X0 104 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 KTN1-AS1Q86SY8 53 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 TRAPPC6BQ86SZ2 158 aa0.94□□□□□ -2.26
VPS13C-207ENST00000558919 CLVS1Q8IUQ0 354 aaPredicted RBP0.94□□□□□ -2.26
VPS13C-207ENST00000558919 C12orf45Q8N5I9 185 aaPredicted RBP0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms