RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 WDR82Q6UXN9 313 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 CD177Q8N6Q3 437 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 BCL2L2Q92843 193 aaPredicted RBP9.33□□□□□ -0.92
LDLR-208ENST00000558518 TMEM45BQ96B21 275 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 OR51B2Q9Y5P1 312 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 IGLL1P15814 213 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 SELENOTP62341 195 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 GABRA6Q16445 453 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 FBLN7Q53RD9 439 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 LINC00173Q6ZV60 143 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 LAMA5O15230 3695 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 K7ESF4 209 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 SELENOVP59797 346 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 UBE2G1P62253 170 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 NIT1Q86X76 327 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 SNRNP40Q96DI7 357 aaKnown RBP9.33□□□□□ -0.92
LDLR-208ENST00000558518 PGLYRP4Q96LB8 373 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 CDX2Q99626 313 aaPredicted RBP9.33□□□□□ -0.92
LDLR-208ENST00000558518 TRGV5A0A0B4J1U4 118 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 PRRX1P54821 245 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 CX3CL1P78423 397 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 GAGE1Q13065 139 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 SSPNQ14714 243 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 LINC00470Q9BZP3 86 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 NPIPB11E5RHQ5 1161 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 COX7A2P2O60397 106 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 MPDU1O75352 247 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 IGHV1-2P23083 117 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 ERVK11-1P61568 191 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 RBMXL3Q8N7X1 1067 aaKnown RBP9.32□□□□□ -0.92
LDLR-208ENST00000558518 GNB1LQ9BYB4 327 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 PCED1AQ9H1Q7 454 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 ZNF835Q9Y2P0 537 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 MUC21A0A0G2JKD1 596 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 MUC21A0A140T8X8 626 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 OR2T8A6NH00 312 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 HIGD1CA8MV81 97 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 PSG1P11464 419 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 MORN2Q502X0 79 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 MUC21Q5SSG8 566 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 C10orf55Q5SWW7 151 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 EBLN2Q6P2I7 272 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 OR8B3Q8NGG8 313 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 C18orf32Q8TCD1 76 aa9.32□□□□□ -0.92
LDLR-208ENST00000558518 IGKV3D-15A0A087WSY6 115 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 OR4C46A6NHA9 309 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 HSBP1L1C9JCN9 74 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 HLA-DQA1P01909 254 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 SLC25A5P05141 298 aaKnown RBP9.31□□□□□ -0.92
LDLR-208ENST00000558518 SPRNQ5BIV9 151 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 VWA1Q6PCB0 445 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 C1orf229Q6ZS94 237 aaPredicted RBP9.31□□□□□ -0.92
LDLR-208ENST00000558518 TMEM116Q8NCL8 245 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 AMMECR1Q9Y4X0 333 aaPredicted RBP9.31□□□□□ -0.92
LDLR-208ENST00000558518 ADGRG4Q8IZF6 3080 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 LNP1A1A4G5 178 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 IGKV1-16P04430 117 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 LINC00869P0C866 280 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 FXYD7P58549 80 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 RNFT1Q5M7Z0 435 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 OR4S2Q8NH73 311 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 FLYWCH2Q96CP2 140 aaKnown RBP9.31□□□□□ -0.92
LDLR-208ENST00000558518 SFXN3Q9BWM7 321 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 PPP1R14DQ9NXH3 145 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 ENSAO43768 121 aaKnown RBP9.31□□□□□ -0.92
LDLR-208ENST00000558518 MOSP00540 346 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 TNFSF4P23510 183 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 PEAR1Q5VY43 1037 aaPredicted RBP9.31□□□□□ -0.92
LDLR-208ENST00000558518 AMMECR1LQ6DCA0 310 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 CXXC4Q9H2H0 198 aa9.31□□□□□ -0.92
LDLR-208ENST00000558518 A0A087X0K7 114 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 SAA2-SAA4A0A096LPE2 208 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 TRGV10A0A0A0MS01 117 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 IGHV3-72A0A0B4J1Y9 119 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 FAM181BA6NEQ2 426 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 ISLRO14498 428 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 SAA2P0DJI9 122 aaPredicted RBP9.3□□□□□ -0.92
LDLR-208ENST00000558518 CCL11P51671 97 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 HSPE1P61604 102 aaKnown RBP9.3□□□□□ -0.92
LDLR-208ENST00000558518 SSBP2P81877 361 aaPredicted RBP9.3□□□□□ -0.92
LDLR-208ENST00000558518 Q0VG73 95 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 UBE2V1Q13404 147 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 TMEM167BQ9NRX6 74 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 COX11Q9Y6N1 276 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 KLRC4-KLRK1H3BQV0 150 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 VDAC2P45880 294 aaPredicted RBP9.3□□□□□ -0.92
LDLR-208ENST00000558518 RIPPLY3P57055 190 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 TAS2R45P59539 299 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 Q8N976 141 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 RAB1CQ92928 201 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 PILRBQ9UKJ0 227 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 IGKV1OR2-108A0A075B7D4 117 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 MT-ND6P03923 174 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 P0C879 139 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 TMEM164Q5U3C3 297 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 HCP5Q6MZN7 132 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 OR1B1Q8NGR6 318 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 COMMD5Q9GZQ3 224 aa9.3□□□□□ -0.92
LDLR-208ENST00000558518 M0R1B8 84 aa9.29□□□□□ -0.92
LDLR-208ENST00000558518 C19orf35Q6ZS72 473 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms