RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 C17orf51A8MQB3 221 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 MS4A18H0YCH9 400 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 RUNX3Q13761 415 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 MS4A18Q3C1V0 323 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 NUP35Q8NFH5 326 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 CYB5D2Q8WUJ1 264 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 IDI2-AS1Q9NZ38 188 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 ATP23Q9Y6H3 246 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 NCOA6Q14686 2063 aaPredicted RBP11.36□□□□□ -0.59
SHMT2-226ENST00000556825 MED12LQ86YW9 2145 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 IGLV2-8P01709 118 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 SCTP09683 121 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 YPEL5P62699 121 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 TM4SF20Q53R12 229 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 NFE4Q86UQ8 179 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 FAM168AQ92567 244 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 IRF7Q92985 503 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 DEPPQ9NTK1 212 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 WDR83OSQ9Y284 106 aa11.36□□□□□ -0.59
SHMT2-226ENST00000556825 TRAV5A0A0B4J249 113 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 TMEM78Q5T7P6 136 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 AMTNQ6UX39 209 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 ATP5L2Q7Z4Y8 100 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 SLC25A33Q9BSK2 321 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 FAM90A18PA6NE21 464 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 FAM90A16PA6NEW6 464 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 FAM90A8PA6NJQ4 464 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 FAM90A9PA6NNJ1 464 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 NCR2O95944 276 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 IFITM1P13164 125 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 LY6G5CQ5SRR4 150 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 Q6ZSR3 168 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 PIP4P1Q86T03 277 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 DNAJC30Q96LL9 226 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 ZNF747Q9BV97 191 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 HIGD1BQ9P298 99 aa11.35□□□□□ -0.59
SHMT2-226ENST00000556825 TRBV20-1A0A075B6N2 111 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 TMED7-TICAM2A0A0A6YYA0 188 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 C5orf67F2Z3F1 127 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 WISP1O95388 367 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 GP1BBP13224 206 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 PPIFP30405 207 aaKnown RBP11.34□□□□□ -0.59
SHMT2-226ENST00000556825 CAMPP49913 170 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 FOXA3P55318 350 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-226ENST00000556825 GAGE2BQ13066 116 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 GAGE2EQ4V326 116 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 TTC32Q5I0X7 151 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 Q6ZR03 302 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 SSBP3Q9BWW4 388 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-226ENST00000556825 RAB9BQ9NP90 201 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 STARD5Q9NSY2 213 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 GAGE2DQ9UEU5 116 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 MRPS17Q9Y2R5 130 aaKnown RBP11.34□□□□□ -0.59
SHMT2-226ENST00000556825 RALGAPA1Q6GYQ0 2036 aa11.34□□□□□ -0.59
SHMT2-226ENST00000556825 A0A1B0GXF2 115 aa11.33□□□□□ -0.59
SHMT2-226ENST00000556825 NPIPB13A6NJU9 1138 aa11.33□□□□□ -0.59
SHMT2-226ENST00000556825 NPIPB4C9JG80 1138 aa11.33□□□□□ -0.59
SHMT2-226ENST00000556825 BCL3P20749 454 aa11.33□□□□□ -0.59
SHMT2-226ENST00000556825 ZNF77Q15935 545 aa11.33□□□□□ -0.59
SHMT2-226ENST00000556825 MEIG1Q5JSS6 88 aa11.33□□□□□ -0.59
SHMT2-226ENST00000556825 A8MWL6 223 aa11.33□□□□□ -0.6
SHMT2-226ENST00000556825 ERVK11-1P61568 191 aa11.33□□□□□ -0.6
SHMT2-226ENST00000556825 FAM159AQ6UWV7 190 aa11.33□□□□□ -0.6
SHMT2-226ENST00000556825 OR5AN1Q8NGI8 311 aa11.33□□□□□ -0.6
SHMT2-226ENST00000556825 NHP2Q9NX24 153 aaKnown RBP11.33□□□□□ -0.6
SHMT2-226ENST00000556825 IL36RNQ9UBH0 155 aa11.33□□□□□ -0.6
SHMT2-226ENST00000556825 TMEM213A2RRL7 107 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 TMEM262E9PQX1 116 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 RBP4P02753 201 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 H1FNTQ75WM6 255 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-226ENST00000556825 PPDPFLQ8WWR9 84 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 KIR2DL4Q99706 377 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 DUSP13Q9UII6 198 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 F11RQ9Y624 299 aaKnown RBP11.32□□□□□ -0.6
SHMT2-226ENST00000556825 SOX21Q9Y651 276 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-226ENST00000556825 THADAQ6YHU6 1953 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 SNRNP200O75643 2136 aaKnown RBP11.32□□□□□ -0.6
SHMT2-226ENST00000556825 IGKV1-27A0A075B6S5 117 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 IGKV1-6A0A0C4DH72 117 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 MPDU1O75352 247 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 MEOX1P50221 254 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 FAM231DQ6ZW35 169 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 PCP2Q8IVA1 136 aa11.32□□□□□ -0.6
SHMT2-226ENST00000556825 IGKV1-12A0A0C4DH73 117 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 KIR2DS1A0A191URI9 304 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 TCRBV4S1A1TA0A5B7 111 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 MT-CO3P00414 261 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 IGKV1D-12P01611 117 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 RPS16P62249 146 aaKnown RBP11.31□□□□□ -0.6
SHMT2-226ENST00000556825 KIR2DS1Q14954 304 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 POU2AF1Q16633 256 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 CFAP126Q5VTH2 177 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 RPEQ96AT9 228 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 IGF2BP2-AS1Q96M15 143 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 TMUB1Q9BVT8 246 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 ADAMTS9Q9P2N4 1935 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 SMCPP49901 116 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-226ENST00000556825 LGALS9BQ3B8N2 356 aa11.31□□□□□ -0.6
SHMT2-226ENST00000556825 PRR30Q53SZ7 412 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-226ENST00000556825 LGALS9CQ6DKI2 356 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms