RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 C11orf87Q6NUJ2 197 aa10.39□□□□□ -0.75
SHMT2-219ENST00000555563 GPR146Q96CH1 333 aa10.39□□□□□ -0.75
SHMT2-219ENST00000555563 BSCL2Q96G97 398 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-219ENST00000555563 ATP6V0BQ99437 205 aa10.39□□□□□ -0.75
SHMT2-219ENST00000555563 CHRDL1Q9BU40 450 aa10.39□□□□□ -0.75
SHMT2-219ENST00000555563 ZNF436Q9C0F3 470 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-219ENST00000555563 MT-CO2P00403 227 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 IGHV3-48P01763 117 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 RNASE2P10153 161 aaKnown RBP10.38□□□□□ -0.75
SHMT2-219ENST00000555563 CBLN1P23435 193 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 ADMP35318 185 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 SNCAP37840 140 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 INPP1P49441 399 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 SPCS3P61009 180 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 SRPXP78539 464 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 SPSB3Q6PJ21 355 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 OR2K2Q8NGT1 345 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 OR52E5Q8NH55 327 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 TMEM190Q8WZ59 177 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 PINX1Q96BK5 328 aaKnown RBP10.38□□□□□ -0.75
SHMT2-219ENST00000555563 SLC25A21Q9BQT8 299 aaPredicted RBP10.38□□□□□ -0.75
SHMT2-219ENST00000555563 ENY2Q9NPA8 101 aa10.38□□□□□ -0.75
SHMT2-219ENST00000555563 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.38□□□□□ -0.75
SHMT2-219ENST00000555563 A0A0B4J2A0 478 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 NXPH3O95157 252 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 SULT1A3P0DMM9 295 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 SULT1A4P0DMN0 295 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 ANXA3P12429 323 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 VAMP1P23763 118 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 CCR6P51684 374 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 RBMS2Q15434 407 aaKnown RBP10.37□□□□□ -0.75
SHMT2-219ENST00000555563 DEFB114Q30KQ6 69 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 TM4SF20Q53R12 229 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 TMEM128Q5BJH2 165 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 NMSQ5H8A3 153 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 PVRIGQ6DKI7 326 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 LGI3Q8N145 548 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 Q8N1Y9 231 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 ZNF414Q96IQ9 312 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 SHPKQ9UHJ6 478 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 SELENOKQ9Y6D0 94 aa10.37□□□□□ -0.75
SHMT2-219ENST00000555563 LINC00854A0A1B0GVQ3 168 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 FRMD6-AS1P0C7T7 363 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 IL7P13232 177 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 FCGR2BP31994 310 aaPredicted RBP10.36□□□□□ -0.75
SHMT2-219ENST00000555563 MFAP4P55083 255 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 PPP1R1AQ13522 171 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 BSXQ3C1V8 233 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 LYZL2Q7Z4W2 148 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 GTSCR1Q86UQ5 136 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 CENPSQ8N2Z9 138 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 UXS1Q8NBZ7 420 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 ASCL2Q99929 193 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 PALMDQ9NP74 551 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 GAR1Q9NY12 217 aaKnown RBP10.36□□□□□ -0.75
SHMT2-219ENST00000555563 TECRQ9NZ01 308 aaKnown RBP10.36□□□□□ -0.75
SHMT2-219ENST00000555563 MLXQ9UH92 298 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 UFC1Q9Y3C8 167 aa10.36□□□□□ -0.75
SHMT2-219ENST00000555563 KMT2CQ8NEZ4 4911 aaKnown RBP10.36□□□□□ -0.75
SHMT2-219ENST00000555563 IGHV3OR16-8A0A075B7F1 116 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 NAP1L6A6NFF2 107 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 CEBPZOSA8MTT3 80 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 CORTO00230 105 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 NDUFA4O00483 81 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 NUPL2O15504 423 aaKnown RBP10.35□□□□□ -0.75
SHMT2-219ENST00000555563 NDUFB6O95139 128 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 CTSGP08311 255 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 IGHV4-30-4P0DP06 118 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 SUB1P53999 127 aaKnown RBP eCLIP10.35□□□□□ -0.75
SHMT2-219ENST00000555563 ELLP55199 621 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-219ENST00000555563 SMCO1Q147U7 214 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 ANKRD55Q3KP44 614 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 BTNL8Q6UX41 500 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 TMEM61Q8N0U2 210 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 MARC2Q969Z3 335 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 WDR89Q96FK6 387 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-219ENST00000555563 TXN2Q99757 166 aa10.35□□□□□ -0.75
SHMT2-219ENST00000555563 ZNF785A8K8V0 405 aa10.34□□□□□ -0.75
SHMT2-219ENST00000555563 GNG7O60262 68 aa10.34□□□□□ -0.75
SHMT2-219ENST00000555563 C8orf88P0DMB2 117 aa10.34□□□□□ -0.75
SHMT2-219ENST00000555563 BTCP35070 178 aa10.34□□□□□ -0.75
SHMT2-219ENST00000555563 OPRK1P41145 380 aa10.34□□□□□ -0.75
SHMT2-219ENST00000555563 RELQ04864 619 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-219ENST00000555563 GUCA2BQ16661 112 aa10.34□□□□□ -0.75
SHMT2-219ENST00000555563 SLC24A4Q8NFF2 622 aa10.34□□□□□ -0.75
SHMT2-219ENST00000555563 C20orf24Q9BUV8 137 aa10.34□□□□□ -0.75
SHMT2-219ENST00000555563 FNDC4Q9H6D8 234 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-219ENST00000555563 HEYLQ9NQ87 328 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-219ENST00000555563 DAZ1Q9NQZ3 744 aaKnown RBP10.34□□□□□ -0.75
SHMT2-219ENST00000555563 PIGBOS1A0A0B4J2F0 54 aa10.33□□□□□ -0.76
SHMT2-219ENST00000555563 DUXBA0A1W2PPF3 345 aa10.33□□□□□ -0.76
SHMT2-219ENST00000555563 ZNF207O43670 478 aaKnown RBP10.33□□□□□ -0.76
SHMT2-219ENST00000555563 SFT2D2O95562 160 aa10.33□□□□□ -0.76
SHMT2-219ENST00000555563 HTR2BP41595 481 aa10.33□□□□□ -0.76
SHMT2-219ENST00000555563 CD81P60033 236 aa10.33□□□□□ -0.76
SHMT2-219ENST00000555563 TNFRSF9Q07011 255 aa10.33□□□□□ -0.76
SHMT2-219ENST00000555563 SBSPONQ8IVN8 264 aa10.33□□□□□ -0.76
SHMT2-219ENST00000555563 LRTM2Q8N967 370 aa10.33□□□□□ -0.76
SHMT2-219ENST00000555563 DUSP18Q8NEJ0 188 aa10.33□□□□□ -0.76
SHMT2-219ENST00000555563 MRPL36Q9P0J6 103 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms