RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 FABP12A6NFH5 140 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 C15orf62A8K5M9 175 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 C3orf84H3BNL1 204 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 ST8SIA3O43173 380 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 CTSGP08311 255 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 MFAP4P55083 255 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 RELQ04864 619 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 HAGHQ16775 308 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 ANKRD55Q3KP44 614 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 SP6Q3SY56 376 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 OR51S1Q8NGJ8 323 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 OR52E5Q8NH55 327 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 RBPMSQ93062 196 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 IL22RA2Q969J5 263 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 GALNT14Q96FL9 552 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 ZNF414Q96IQ9 312 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 CITED4Q96RK1 184 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 TUBA4BQ9H853 241 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 CACFD1Q9UGQ2 172 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 SCP2D1Q9UJQ7 156 aa12.05□□□□□ -0.48
CCDC88C-209ENST00000554872 KMT2CQ8NEZ4 4911 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 A0A0G2JRQ6 117 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 CORTO00230 105 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 CD7P09564 240 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 OR5AC1P0C628 307 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 IZUMO4Q1ZYL8 232 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 BSXQ3C1V8 233 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 BTNL8Q6UX41 500 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 SLC16A13Q7RTY0 426 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 SLC35G3Q8N808 338 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 TRIM63Q969Q1 353 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 OR10C1Q96KK4 312 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 SCGB3A2Q96PL1 93 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 SPAG8Q99932 426 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 PDCD10Q9BUL8 212 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 TMEM56-RWDD3S4R434 201 aa12.04□□□□□ -0.48
CCDC88C-209ENST00000554872 NUPL2O15504 423 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-209ENST00000554872 MT-CO2P00403 227 aa12.03□□□□□ -0.48
CCDC88C-209ENST00000554872 GUCA2BQ16661 112 aa12.03□□□□□ -0.48
CCDC88C-209ENST00000554872 Q56UQ5 140 aa12.03□□□□□ -0.48
CCDC88C-209ENST00000554872 LHFPL5Q8TAF8 219 aa12.03□□□□□ -0.48
CCDC88C-209ENST00000554872 MISP3Q96FF7 219 aa12.03□□□□□ -0.48
CCDC88C-209ENST00000554872 FAM110AQ9BQ89 295 aa12.03□□□□□ -0.48
CCDC88C-209ENST00000554872 V9GYH0 126 aa12.03□□□□□ -0.48
CCDC88C-209ENST00000554872 IGHV3-35A0A0C4DH35 117 aa12.02□□□□□ -0.49
CCDC88C-209ENST00000554872 OR11H12B2RN74 326 aa12.02□□□□□ -0.49
CCDC88C-209ENST00000554872 TSPAN4O14817 238 aa12.02□□□□□ -0.49
CCDC88C-209ENST00000554872 IFNA17P01571 189 aa12.02□□□□□ -0.49
CCDC88C-209ENST00000554872 RNASE2P10153 161 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-209ENST00000554872 SNCAP37840 140 aa12.02□□□□□ -0.49
CCDC88C-209ENST00000554872 SUB1P53999 127 aaKnown RBP eCLIP12.02□□□□□ -0.49
CCDC88C-209ENST00000554872 SPCS3P61009 180 aa12.02□□□□□ -0.49
CCDC88C-209ENST00000554872 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-209ENST00000554872 NBEAL2Q6ZNJ1 2754 aa12.02□□□□□ -0.49
CCDC88C-209ENST00000554872 DNAH7Q8WXX0 4024 aa12.02□□□□□ -0.49
CCDC88C-209ENST00000554872 IGHV3-21A0A0B4J1V1 117 aa12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 PIGBOS1A0A0B4J2F0 54 aa12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 FAUP35544 74 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 NPBWR1P48145 328 aa12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 AP3S2P59780 193 aa12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 KLF9Q13886 244 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 Q6ZRM9 215 aa12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 RBPMS2Q6ZRY4 209 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 SELENOHQ8IZQ5 122 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 UBAC2Q8NBM4 344 aa12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 MUC7Q8TAX7 377 aa12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 TMEM230Q96A57 120 aa12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 EDA2RQ9HAV5 297 aa12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 KCNIP3Q9Y2W7 256 aa12.01□□□□□ -0.49
CCDC88C-209ENST00000554872 RBMY1BA6NDE4 496 aaKnown RBP12□□□□□ -0.49
CCDC88C-209ENST00000554872 RBMY1EA6NEQ0 496 aaKnown RBP12□□□□□ -0.49
CCDC88C-209ENST00000554872 RBMY1DP0C7P1 496 aaKnown RBP12□□□□□ -0.49
CCDC88C-209ENST00000554872 ETV6P41212 452 aa12□□□□□ -0.49
CCDC88C-209ENST00000554872 HOXA1P49639 335 aaPredicted RBP12□□□□□ -0.49
CCDC88C-209ENST00000554872 TMEM187Q14656 261 aa12□□□□□ -0.49
CCDC88C-209ENST00000554872 ZNF79Q15937 498 aa12□□□□□ -0.49
CCDC88C-209ENST00000554872 TMEM268Q5VZI3 342 aa12□□□□□ -0.49
CCDC88C-209ENST00000554872 LAMTOR1Q6IAA8 161 aa12□□□□□ -0.49
CCDC88C-209ENST00000554872 CCDC190Q86UF4 302 aa12□□□□□ -0.49
CCDC88C-209ENST00000554872 DEFB125Q8N687 156 aa12□□□□□ -0.49
CCDC88C-209ENST00000554872 DUSP18Q8NEJ0 188 aa12□□□□□ -0.49
CCDC88C-209ENST00000554872 OR52B4Q8NGK2 314 aa12□□□□□ -0.49
CCDC88C-209ENST00000554872 RNASE11Q8TAA1 199 aaKnown RBP12□□□□□ -0.49
CCDC88C-209ENST00000554872 HIPK2Q9H2X6 1198 aa12□□□□□ -0.49
CCDC88C-209ENST00000554872 SRD5A3Q9H8P0 318 aa12□□□□□ -0.49
CCDC88C-209ENST00000554872 GNG7O60262 68 aa11.99□□□□□ -0.49
CCDC88C-209ENST00000554872 SCAF4O95104 1147 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-209ENST00000554872 S100A5P33763 92 aa11.99□□□□□ -0.49
CCDC88C-209ENST00000554872 HTR2BP41595 481 aa11.99□□□□□ -0.49
CCDC88C-209ENST00000554872 SRPXP78539 464 aa11.99□□□□□ -0.49
CCDC88C-209ENST00000554872 SPINK9Q5DT21 86 aa11.99□□□□□ -0.49
CCDC88C-209ENST00000554872 PINX1Q96BK5 328 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-209ENST00000554872 ENY2Q9NPA8 101 aa11.99□□□□□ -0.49
CCDC88C-209ENST00000554872 SMPXQ9UHP9 88 aa11.99□□□□□ -0.49
CCDC88C-209ENST00000554872 A0A0B4J2A0 478 aa11.98□□□□□ -0.49
CCDC88C-209ENST00000554872 IGHV7-4-1A0A0J9YVY3 117 aa11.98□□□□□ -0.49
CCDC88C-209ENST00000554872 CD5P06127 495 aa11.98□□□□□ -0.49
CCDC88C-209ENST00000554872 SUPT4H1P63272 117 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-209ENST00000554872 NMSQ5H8A3 153 aa11.98□□□□□ -0.49
CCDC88C-209ENST00000554872 OR4X1Q8NH49 305 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms